Bioinformatics Analysis Tools for Studying Microbiomes at the DOE Joint Genome Institute
Results
PR-PR: Cross-Platform Laboratory Automation System
Contrasting Life Strategies of Viruses that Infect Photo- and Heterotrophic Bacteria, as Revealed by Viral Tagging
Re-evaluating the Systematics of Dendrolycopodium Using Restriction-Site Associated DNA-Sequencing
NMPFamsDB: a database of novel protein families from microbial metagenomes and metatranscriptomes
Hydrothermal Vents and International Science: A Postdoc’s Visit to the JGI
Prokaryotic viruses impact functional microorganisms in nutrient removal and carbon cycle in wastewater treatment plants
MVP: a modular viromics pipeline to identify, filter, cluster, annotate, and bin viruses from metagenomes.
Gene Context Analysis in the Integrated Microbial Genomes (IMG) Data Management System
Tracking the roots of cellulase hyperproduction by the fungus Trichoderma reesei using massively parallel DNA sequencing
Direct Comparisons of Illumina vs. Roche 454 Sequencing Technologies on the Same Microbial Community DNA Sample
Correlation-based network analysis combined with machine learning techniques highlight the role of the GABA shunt in Brachypodium sylvaticum freezing tolerance
