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Structural characterization of a soil viral auxiliary metabolic gene product – a functional chitosanase
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A global atlas of soil viruses reveals unexplored biodiversity and potential biogeochemical impacts
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Metagenomic stable isotope probing reveals bacteriophage participation in soil carbon cycling
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Bacterial and fungal composition and exometabolites control the development and persistence of soil water repellency
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Multi-omics reveals nitrogen dynamics associated with soil microbial blooms during snowmelt
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JGI@25: Using Team Science to Build Communities Around Data
… these initial efforts: Spatafora and Jason Stajich from UC Riverside would focus on broad sampling of early … 100 genomes in progress and 200 that are pending samples from users. Roughly 300 have been published. Spatafora said … of 1 billion years of evolution in Kingdom Fungi — from phylogenetic relationships to evolution of genomic …
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From Sample Shipments to Sequences – A Tour of the JGI’s Sequencing Pipeline
… Every year, the JGI sequences around 35,000 samples — from plants, algae, bacteria, archaea, fungi, viruses — to … the world. Most of those researchers send their samples in from afar, without ever hearing much about the sequencing …
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JGI@25: Solving the Mystery of the Missing Oil
… the thousands of bacterial and archaeal species using a DNA-based array developed at Berkeley Lab. Over the next … track and characterize the shifting waves of microbial communities involved in removing different fractions of the … all levels and developing models for cellular properties, communities and ecosystems.” Building off multiple …
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JGI Early Career Researchers Featured in mSystems Special Issue
… Communications paper, uncovering giant virus sequences in soil for the first time. A second approach known as DNA stable isotope probing (DNA SIP) relies on incubating … specific metabolic processes. A third approach steps away from reconstructing genomes directly from the environment …
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Dissolved Inorganic Carbon-Accumulating Complexes from Autotrophic Bacteria from Extreme Environments
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Deep‐sea bacteria enriched by oil and dispersant from the Deepwater Horizon spill
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Meanders as a scaling motif for understanding of floodplain soil microbiome and biogeochemical potential at the watershed scale
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