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Phylogenomics suggests oxygen availability as a driving force in Thaumarchaeota evolution
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Force measurements of a magnetic micro actuator proposed for a microvalve array
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Increasing the Thermodynamic Driving Force of the Phosphofructokinase Reaction in Clostridium thermocellum
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Here, There and Everywhere: Large and Giant Viruses Abound Globally
… viruses (NCLDV) supergroup. The expansion of the diversity for large and giant viruses offered the researchers insights … possible to seek out and characterize uncultivated viruses. For instance, a 2018 study from a JGI-led team uncovered giant viruses in the soil for the first time. The current study applied a multi-step …
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GenomeOcean Leverages AI to Decode Nature’s Secret Language
… available data, GenomeOcean employs artificial intelligence for cutting-edge genomic research — and is capable of … our understanding of life’s genomic code, advancing DOE efforts of achieving a predictive understanding of biological … we can take advantage of existing methodologies developed for natural languages to study genomes,” Wang explained.  …
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From Intern to Published Scientist: The Journey of a JGI-UC Merced Intern
… For many scientists, the culmination of their work into a … my first publication and it feels so rewarding,” Wint said. For Axel Visel, JGI Science Deputy and a co-founder of the … She continued working virtually with her JGI mentors for nearly three years after her internship. “That level of …
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Toward More Reproducible, Reusable Stable Isotope Probing Experiments
… shed more light on microbial communities than ever before — especially with the prospect of meta-analyses boosted … chemical, where ordinary Carbon-12 atoms are swapped for the heavier, non-radioactive isotope Carbon-13, … illuminating the inner workings of an environment. For example, SIP experiments can show how soil microbes …
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New and Improved: Eucalyptus Reference is Now Accessible
… improved genome assembly to support targeted tree breeding for the bioeconomy.   The Science Researchers report a new reference genome for eucalyptus in the July edition of the journal G3 Genes | … support targeted genetic breeding of eucalypts as woody biomass crops for the bioeconomy. The work contributes to …
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Team Science Reveals Important Protein in Poplar
… Knockout experiments showcase potential for engineering bioenergy crops The Science Scientists at … within poplar involved in plant growth, lignin production, and disease resistance.  The Impact With … iron, engineered poplar can be used to develop bioproducts for industrial applications. For example, lignin could be …
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An Inside Look at How Plants and Mycorrhizal Fungi Cooperate
… soil and boosting biofuel feedstocks with less fertilizer. For millions of years, underground fungi have lived in … studies to date. This paper  is the cover article for the April 2024 issue  of  Nature Plants .  “We wanted to … symbiosis in other bioenergy grasses, like sorghum and switchgrass. We’re optimizing systems now, so that we can …
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Training the Next Generation of Talent
… Olmstead was back on campus at the University of California, Merced to start orientation as a first-year graduate … Lawrence worked with Nicole Johnson in Wang’s group on developing an algorithm for RNA-Seq assembly. RNA-Seq is a … which conducts cancer research. Lawrence’s project had him developing a framework that would allow users to …
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You Can Move, But You Can’t Hide
… and spread from cell to cell. Two of the most common forms of MGEs are viruses and plasmids. They can be found in … the National Microbiome Data Collaborative’s EDGE platform. The Impact In order to gain more insights into Earth’s … with more than 15 million viral genomes. It was also key to developing the first version of the  IMG Plasmid Resource …
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