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… samples in a single experiment — and integrated these data with single-cell gene expression maps. Together, the scale of data enabled by these approaches creates a vast resource … robustness will enable researchers to propose multi-genome projects, opening new avenues for comparative regulatory …

… manages metabolomics production for community sequencing projects and heads R&D efforts to expand the metabolomics … nonpolar metabolite analysis, creation of large metabolite databases by running 1000s of metabolite standards, and … custom software for integrating metabolomics with genomic data (MAGI) for functional annotation and identifying …

… be specific to species or groups of species.  The genome data also revealed that green millet was introduced into the … and Adam Healey, two of the co-first authors, led the data analyses and assembled the green millet “pan-genome” (a … JGI group has been wonderful to collaborate with, and this [project] wouldn’t have been possible without their …

… infrastructure – DNA sequencing, synthesis, metabolomics, data analysis, and new technology developments – has … that the JGI has put together. In collaboration on a project with the Newman lab, an important question arose: … said. Given the vast unknowns contained in metagenomic data sets, Holmes and his group set out to use protein …

… with the Integrated Microbial Genomes & Microbiomes (IMG/M) data and workflows for computational analysis and interpretation of sequence data. IMG/M is a web-based platform that provides access to the wealth of public microbiome sequence data and enables the user to analyze these data with …

… and Environmental Research in one proposed research project. For this project, RNA sequencing was done by the JGI, and proteomics …

… program managers, and intern alumni will introduce projects designed for students to gain research experience … to get credit for their scientific contributions through data citations, authorship, and presenter opportunities. …

… focus on Microbiome Research with an emphasis on Microbiome Data Science. His group is developing novel methods for … analysis, as well as mining and visualization of big data. …

… partnership had become a “model” of sorts at the Lab. “This project represents part of our long term efforts to …

… I really hope to gain laboratory experience working with tools as well as laboratory machines in hopes of …

… the JGI’s primary point of contact for all High-Throughput Data Generation Platforms (Sequencing, Single Cell, …

… used 1,870 known virus-host pairs to generate a matrix of data points.  Applied to 216,015 high-quality virus sequences in the IMG/VR database, the iPHoP program generated many new … reflecting factors such as the quality and number of datasets for human microbiome data. In other environments, …