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… (metagenomes). However, the quality and completeness of metagenome-assembled virus sequences vary widely. In a … the blind men who encounter an elephant for the first time. Based on the single body part each blind man touches – a … Additionally, CheckV was able to identify just over 17,000 contiguous sequences (contigs) of proviruses flanked …

Programs, he focuses on the development and implementation of strategic initiatives at the JGI. Dr. Visel received his … and applied novel computational and experimental sequence-based methods for elucidating the gene regulatory landscape … EM, Pennacchio LA*, Visel A * (2013). Rapid and Pervasive Changes in Genome-wide Enhancer Usage during Mammalian …

The 11th cohort of JGI-UC Merced interns pick highlights from … their summer experiences. This year the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office … very cutting edge and I am happy to be a part of a positive change in science.” Mentor: Zhong Wang Project: “ Improving …

Nov. 2: Getting Credit for Scientific Contributions of Any Size What is considered to be a scientific … students (and their mentors) how to begin establishing a professional presence through getting credit for any scientific contribution they make, whether as part of a course or internship, and before ever publishing a …

Over the course of the summer, the JGI-UC Merced Genomics Internship paired … interactions to functional genomics. Hear from five of the Summer 2019 interns, who briefly shared their experiences below. …

… than 20 UC Merced students have contributed to the research of 13 JGI scientists since the program’s inception. In 2014, … and Peatland Responses Under Climatic and Environmental Change (SPRUCE) project Melanie LeGro (2016 graduate …

… mentors TBK Reddy and Dimitri Stamatis, Porting XML/Python Based Quality Control to Database/Java Based Process in Gold … Emerald Nash and mentor Jonelle Basso, Experimental Study of Root Colonization by Resident Phages of a Plant Growth … and the fact that I got to do a project involving over 12,000 fungal genomes was just really, really exciting for …

… focused on building tools to facilitate expert curation of human gene models in support of JGI’s contributions to the Human Genome Project, he began … across the plant kingdom. Nucleic acids research 51 (16), 8383-8401. JT Lovell et al., 2022. GENESPACE tracks …

… in  Microbiome , researchers from the US Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office … the number of known high quality virophage genome sequences 10-fold through computational approaches. By mining more … analysis led to the identification of 328 “high quality” (based on completeness) diverse new virophage genomes …

… (CSMB) at Oak Ridge National Laboratory.   On March 2, 2021, the Environmental Molecular Sciences Laboratory hosted a … on “Integrated Multi-omics Analyses for the Prediction of Metabolic Flux in. Lignin Conversion”       … The U.S. … sequencing and computational analysis that enable systems-based scientific approaches to these challenges.  DOE’s …

On September 1, JGI held a JGI Engagement: Pro Tips for Successful … and relevance to the DOE’s mission.  Have someone proofread your proposal to make sure the goals, experimental … how competencies can be built. We recommend exploring how KBase (www.kbase.us) can support biological data analysis. It …