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JGI@25: Strengthening Soybean
… In honor of the JGI's 25th anniversary in 2022, we have revisited a number of … our collaborations and capabilities to enable great science that will help solve energy and environmental … completed by the JGI. It has since been cited more than 5,400 times, including a number of projects that point to …
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JGI@25: Building a Better Bean
… In honor of the JGI's 25th anniversary in 2022, we have revisited a number of … our collaborations and capabilities to enable great science that will help solve energy and environmental … the paper was published in 2014, it has been cited 1,025 times and the seemingly humble common bean has fueled …
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Simon Roux
… Pascal, France M.S. in Data Analysis and Modeling for Life Sciences, Université Blaise Pascal, France Ph.D. in … RNA virome reveals diverse clades of bacteriophages. Cell 185, 4023–4037. Coclet et al., 2023. Virus diversity and … long standing virus-host interactions. The ISME Journal 15, 1569–1584. Nayfach et al., 2020. CheckV assesses the …
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A New Actinobacterial Chapter in the Genomic Encyclopedia of Bacteria and Archaea
… Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at Lawrence Berkeley National … new GEBA-Actino genome sequences were combined with nearly 5,000 publicly available ones and 1,100 metagenome-assembled … of Energy Joint Genome Institute, a DOE Office of Science User Facility  located at Lawrence Berkeley National …
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Olpidium, The Key to the Origin of Terrestrial Fungi
… Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility, found that the fungus Olpidium is a … Taking a conservative approach, we were able to assemble ~75% of the Olpidium genome and retrieve ~300 markers for … these diversification events occurred approximately 650 million years ago, and that the first terrestrial fungi …
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An Inside Look at How Plants and Mycorrhizal Fungi Cooperate
… Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at Lawrence Berkeley National … gene expression within circular capture areas roughly 55-microns in diameter — about the width of a human hair. At … of Energy Joint Genome Institute, a DOE Office of Science User Facility  located at Lawrence Berkeley National …
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Ian Blaby
… carbon metabolism in cyanobacteria Nature Communications 15(1) 3167. 2024 Simirenko et al ., gRNA-SeqRET: a universal … by coupling Cre-lox and CRISPR-Cas9 systems. PloS one. 15: 11. 2020 Blaby & Cheng, Building a custom high-throughput … Chlamydomonas genome project: a decade on. Trends in plant science . 19: 10, 672-680. 2014 Blaby, et. al., …
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Researching and Solving Real-World Problems with the 2023 JGI-UC Merced Interns
… determination as they came onsite. From data carpentry to science communications, their schedules were filled with …
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DAP-seq Drives Robust Mapping of Gene Regulation
… falling. As  published online in  Nature Plants  on July 15, researchers have developed multiplexed assays — … grasses to broccoli and trees like poplar, spanning about 150 million years of evolution,” said Leo Baumgart, first … at the DOE Joint Genome Institute (JGI), a DOE Office of Science User Facility located at Lawrence Berkeley National …
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Fields of Breeders’ Dreams: A Team Effort Toward Targeted Crop Improvements
… Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at Lawrence Berkeley National … version of the genome is assembled into sequences of 5.5 million basepair (bp) in length, while the previous … of Energy Joint Genome Institute, a DOE Office of Science User Facility  located at Lawrence Berkeley National …
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RECAP: Multi-Omic Journeys with 2023 JGI Annual Meeting Keynotes
… of the 2023 JGI Annual Meeting. As the JGI’s Metagenome Science Program Head, Emiley Eloe-Fadrosh, introduced Bruce … in the earth’s soils. While she admits that it “0.25% doesn’t seem like a lot (referring to the abundance of … of Energy Joint Genome Institute, a DOE Office of Science User Facility  located at Lawrence Berkeley National …
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MGM Workshop at Fisabio Summer School
… professionals of biology, biomedical research, the health sciences and related fields who are interested in learning …
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