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JGI@25: Using Team Science to Build Communities Around Data
… Spatafora and Jason Stajich from UC Riverside would focus on broad sampling of early diverging fungi, and Francis … National Institute for Agricultural Research (INRAE) focused on in-depth exploration of ecology-related groups of … together over 400 proposal collaborators and co-authors with affiliations at over 180 organizations in 29 U.S. …
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Data Discovery Tool Helps Identify Microbial Roles within Metagenomes
… The Science The  Metagenome Stability Diagram — a tool within the Integrated Microbial Genomes and Microbiomes … developed to help inform scientists and researchers more about the patterns and functions of environmental microbes. Researchers can use the tool to correlate protein annotations with ratios of …
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Yasuo Yoshikuni
… Biology Pathway Engineering group. His research focus includes engineering of non-model yeasts for production … microbe-microbe and plant-microbe interactions in various environments to improve crop yield, and developing a … startup, Bio Architecture Lab, Inc. (BAL), where he used systems and synthetic biology to discover novel …
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Ben Bowen
… in mass spectrometry-centered projects, Dr. Bowen’s work focuses on developing high-performance computing workflows and … supporting the DOE’s Biological and Environmental Research user community in their bioenergy and environmental … Exceptional Achievement 2012 UC Berkeley, Leadership and Development Program Awardee 2005-2009: NIH K25 Mentored …
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Jeremy Schmutz
… Mr. Schmutz’s involvement with the JGI dates back to 1997, when he was working for the … years, Mr. Schmutz has directed the JGI Plant Program, focusing on the organization of community driven science for … Plant Science Program Head at the JGI. Click to learn more about the program's areas of focus, major initiatives and …
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iPHoP: A Matchmaker for Phages and their Hosts
…   To understand virus-host dynamics, computation helps fill in what cultivation can’t. The Science At first, viruses are merely toolkits. To do anything, they must find a … these hosts are microbes like bacteria, not humans. With metagenomic sequencing, researchers have found more of …
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Dealing with Drought: Uncovering Sorghum’s Secrets
… (UC), Berkeley, UC Agriculture and Natural Resources (ANR), US Department of Agriculture P­­lant Gene Expression Center, … Joint Genome Institute (JGI), a DOE Office of Science User Facility located at Lawrence Berkeley National … the mechanisms through which sorghum is equipped to deal with adverse environmental conditions, researchers hope to …
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Polar Phytoplankton Need Zinc to Cope with the Cold
… what makes polar photosynthesizers tick. He’s working with researchers at the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at Lawrence Berkeley National … a cold-adapted microalga: the diatom Fragilariopsis cylindrus . At that time, they noted that the F. cylindrus genome …
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Mapping Heat Resistance in Yeasts
… species to grow better than its closest relative S. paradoxus at high temperatures (39°C/102°F). The Impact One of the … DOE Joint Genome Institute (JGI), a DOE Office of Science User Facility of Lawrence Berkeley National Laboratory, aim … a way to map associations between genotype and phenotype using a strategy called reciprocal hemizygosity analysis via …
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Designer DNA: JGI Helps Users Blaze New Biosynthetic Pathways
… (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at Lawrence Berkeley National … mining, empowering research collaborators to take on ambitious synthetic biology experiments. A recent special issue of … case studies, JGI scientific users share how they’ve worked with the JGI DNA Synthesis Science Program, which started in …
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A Model System for Perennial Grasses
… model to study drought tolerance in perennial grasses using Panicum hallii (Hall’s panicgrass), by generating two … ( Panicum virgatum ) is a candidate bioenergy feedstock with a complex genome with multiple copies of its … for developing methods for converting plant biomass into sustainable fuels for cars and jets. By studying a close …
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Tracing the Evolution of Shiitake Mushrooms
… highlight the diversity of white rot fungi in the genus Lentinula   The Science Shiitake mushrooms get their name from the same place they often … sequences, this work expands the family tree for Lentinula. Within those samples, this study also tracks the enzymes …
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