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The JGI Data Portal: Improving User Experience
… between the JGI and the information technology company Truss has resulted in the JGI Data Portal , a pilot download … is a critical resource — it provides access to all of JGI’s genomic databases and tools,” noted  Kjiersten Fagnan , … in the tradition of agile design and development,” said Linda Setchell, a Truss product manager who is part of the …
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JGI Interns at UC Merced Earn CAMP Merit Awards
… between DOE JGI and UC Merced to promote diversity and inclusion in science and research, two undergraduate students … Woyke) Kyle Kabasares (Major: Physics; Faculty Mentor: Dr. Linda Hirst) Christian Montes (Major: Applied Math; Faculty … at UC Merced. Cristhian and Bryan both spoke briefly about their internship experiences at the DOE JGI – revisit …
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Marine Microbe Contains Multitudes
… A deep dive into microbial genomics reveals one bacterial species is made of four … different lifestyles. The Science The bacterium SAR324 is unusually cosmopolitan. In the ocean’s North Pacific … surface, to the blue-lit twilight zone, to the continuous pressure of the dark abyss, 4000 m (2.5 miles) deep. …
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Neha Varghese
… software to enable analysis and interpretation of genomic and metagenomic data for JGI’s user community. She also provides support for user science … projects through implementation of advanced analysis pipelines and tools as well as development and implementation of …
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Tracing the Evolution of Shiitake Mushrooms
… highlight the diversity of white rot fungi in the genus Lentinula   The Science Shiitake mushrooms get their name … besides Europe and Antarctica. A  new analysis takes a  genomic look at Lentinula samples from around the world. By … complete sequencing of 24 new mushroom genomes, and assembling genomes from 60 existing sequences, this work expands …
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The Genome Portal of the Department of Energy Joint Genome Institute
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The Phaeodactylum genome reveals the evolutionary history of diatom genomes
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Defining a Pan-Genome for Antarctic Archaea
… biogeography. The Science Haloarchaea flourish in hypersaline environments, and researchers are interested in … haloarchaea from different Antarctic lakes. To assess the genomic variation in haloarchaea, they also characterized … sequences from six hypersaline lakes, researchers focused on understanding the genomic variation in haloarchaea …
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Metatranscriptomes of two biological soil crust types from the Mojave desert in response to wetting
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Young inversion with multiple linked QTLs under selection in a hybrid zone
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ORT: A workflow linking genome-scale metabolic models with reactive transport codes.
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Cross-species functional diversity within the PIN auxin efflux protein family
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