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JGI-Enabled Research Demonstrates the Existence of New Methane-Makers
… gas, regulate Earth’s climate. Most methane is produced in environments without oxygen through a process called … the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at … of methanogenesis, with metagenomic support from the JGI. First they were able to identify the potential for …
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Triggering Morel Fruiting
… the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility,  reported on … acquired from an external source.  The work is part of the JGI’s 1000 Fungal Genomes Project, which aims to provide … to acquire carbon from lignocellulosic-abundant matters such as plant litter and to incorporate the assimilated …
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Bacteria and Fungi Divvy Up the Work in Forest Floor
Science Walk in a temperate forest filled with Norway spruce trees, and microbial activity teems beneath your feet. … the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at … Berkeley National Laboratory, to create the database. JGI provided metagenome and metatranscriptome sequences, as …
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I-Min (Amy) Chen
… currently the Microbiome Computational Resource Lead at the JGI, responsible for the data management infrastructure of the Integrated Microbial Genomes (IMG) family of … platforms for gene expression data, one of the most successful data management systems of their kind, deployed to …
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Streamlining Regulon Identification in Bacteria
… the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at … in Nature Communications on June 17 , 2022, was conducted by JGI Director Nigel Mouncey and research scientist Hiroshi …
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When “The Blob” Made It Hotter Under the Water
… rise, so do instances of extreme weather events such as hurricanes and droughts. Another one began in late … the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at … communities up and down the water column. They recently shared their findings in Communications Biology . They …
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For the Tiniest Archaea, A Genomic Switch of Friend or Foe
… the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at … Huberiarchaeum would help fill in metabolic weaknesses. In such cases, these DPANN hitchhikers likely form a mutualistic … The work ( proposal doi: 10.46936/10.25585/60000800 ) conducted by the U.S. Department of Energy Joint Genome …
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Fishing for Novel Cellulose Degraders
… the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at … of potential applications to industrial processes. Summary JGI researchers developed a function-driven, single-cell … the researchers also hooked and were able to reconstruct a high-quality draft co-assembled genome for a new genus …
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Extracting the Secrets of Secondary Metabolites
… the functions of the biosynthetic gene clusters that produce them. The Impact Secondary metabolites are microbial … the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at … CRISPR to knock out or activate genes, researchers at the JGI were able to monitor loss- and gain-of-function. The …
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How to Target a Microbial Needle within a Community Haystack
To overcome this hurdle, a team led by Bernhard Fuchs and his postdoctoral researcher Anissa Grieb at the MPI … the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at … Development of this protocol was enabled by the JGI’s  Emerging Technologies Opportunity Program . The ETOP …
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Improved High-Quality Draft Genome Sequence of the Eurypsychrophile Rhodotorula sp. JG1b, Isolated from Permafrost in the Hyperarid Upper-Elevation McMurdo Dry Valleys, Antarctica
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Building Sphagnum Genomic Resources
… carbon cycling impact.   The Science Enabled by the JGI’s Community Science Program (CSP), researchers are … reason, the U.S. Department of Energy is overseeing the SPRUCE (Spruce and Peatland Responses Under Changing … draft genome for  S. fallax is already available on the  JGI plant portal Phytozome , and the S. magellanicum genome …
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