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MIxS-HCR: a MIxS extension defining a minimal information standard for sequence data from environments pertaining to hydrocarbon resources
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Examining the cause of high inbreeding depression: analysis of whole‐genome sequence data in 28 selfed progeny of Eucalyptus grandis
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Simon Roux
… Dr. Roux joined the JGI in 2017 to lead viral genomics research as part of the … host(s), collaboration with JGI users for analyzing viral datasets, and the organization of community-building efforts … Pascal, France M.S. in Data Analysis and Modeling for Life Sciences, Université Blaise Pascal, France Ph.D. in …
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Tanja Woyke Elected to American Academy of Microbiology
… Congratulations to the JGI’s Tanja Woyke , who has been elected to the American … Genomics and Systems Biology Division of the Lab’s Biosciences Area since 2018. Woyke also holds appointments as … Scientific Achievement , and was among the Lab’s 2015 Women @ the Lab honorees. Woyke’s research focuses on …
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A Grass Model to Help Improve Giant Miscanthus
… Miscanthus  sequence offers insights into benefits of polyploidy and perenniality. The Science A reference genome sequence and genomic toolkit for … Biosciences Institute, the DOE Joint Genome Institute (JGI), a DOE Office of Science User Facility located at … This work was supported by the Energy Biosciences Institute and the DOE Center for Advanced Bioenergy …
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A Complex Confection Decoded: Sugarcane Reference Genome
… can work toward advancing sugarcane biotechnology. The Science Considered the world’s most harvested crop by … The Impact In providing a reference sugarcane  genome , the JGI provides foundational genetic information that crop … effects of breeding practices that transformed sugarcane into production factories for sugar and biomass. …
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Expanding Virophage Diversity
… the US Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science facility, have increased the number of known high … human (for the first time) gut and taxonomically classified into 27 distinct clades (17 of them without previously known …
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Enlarging Windows into Understanding Gene Functions
… JGI innovates protocol revealing how genetic variations in … encoded in the genome sequence is part of the integrative science mission of the U.S. Department of Energy (DOE) Joint … genomes of different species. This can provide insights into how they orchestrate sets of genes to execute similar …
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Non-contiguous finished genome sequence and contextual data of the filamentous soil bacterium Ktedonobacter racemifer type strain (SOSP1-21T)
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GenomeOcean Leverages AI to Decode Nature’s Secret Language
… Trained on environmental data, a new JGI tool more accurately facilitates microbial genome … Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at Lawrence Berkeley National … Imagine you’re at an arcade and need to convert your money into tokens to play the various machines. You’d go find the …
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2022 Progress Report
… (IGB) seen above is home to the DOE Joint Genome Institute (JGI). Researchers from the DOE Systems Biology Knowledgebase (KBase), the National Microbiome Data Collaborative (NMDC), and Berkeley Lab Biosciences Area are also co-located in the IGB. Vision The …
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Engagement Webinar: Harnessing JGI’s Metabolomics Capabilities
… The JGI Engagement Webinar held November 5, 2020 (watch the  … analysis capability available through the  Community Science Program (CSP) . This includes mass … data (secondary metabolomics), how can we map it into these networks? A: We use networks based on the …
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