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When “The Blob” Made It Hotter Under the Water
… carbon from the atmosphere and keeps it in the deep ocean. With genomic samples collected before, during and after The … (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at Lawrence Berkeley National … . The proposal focuses on uncovering the metabolic networks involved in carbon and nutrient flux in marine …
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Plotting a Model for Virus-Host Warfare Deep Below Ground
… are carbon-fixing microbes and targets of multiple viruses in Earth’s deep subsurface. They are abundant … and dominant populations in oxygen-poor environments without oxygen deep below ground. These archaea fix carbon … was  recently reported in Nature Communications. The work was co-led by Victoria Turzynski in Alexander Probst’s …
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A One-Stop Shop for Analyzing Algal Genomes
… is one of the largest data repositories of its kind, with an interactive browser that allows algal scientists and enthusiasts to look deep into more than 100 algal genomes, … key roles in global carbon cycling, are sources of natural products, and have potential as biofuel feedstocks. …
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Finished Genome of Zymomonas mobilis subsp. mobilis Strain CP4, an Applied Ethanol Producer
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Methanolobus use unspecific methyltransferases to produce methane from dimethylsulphide in Baltic Sea sediments
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Metagenome-assembled genomes from microbial communities producing lactic acid from dairy residues
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Triggering Morel Fruiting
… (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility,  reported on just how morel fruiting is … when nutrients are acquired from an external source.  The work is part of the JGI’s 1000 Fungal Genomes Project, which … the fruiting-related decomposition mechanisms of morel with multi-omic approaches, our results revealed a striking …
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Olpidium, The Key to the Origin of Terrestrial Fungi
… (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility, found that the fungus Olpidium is a link in … of fungi from aquatic to terrestrial habitats. The work is part of the JGI’s 1000 Fungal Genomes Project, which … Olpidium attracted the attention of many mycologists with the two publications of the kingdom-wide, multi-gene …
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Building Sphagnum Genomic Resources
… resources to build up Sphagnum as a plant model system focused on carbon cycling studies, rather than for food or fuel … These resources would provide the research community with the ability to address questions such as sphagnum’s … carbon cycling in diverse environments. In addition, this work reflects a collaboration between two programs within …
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Waiting to Respire
… popularizer and communicator (and at one time, the spouse of Lynn Margulis). The information was then used to … postdoctoral fellow Paula Matheus Carnevali was working with a group of metagenome-assembled genomes (MAGs) dubbed … in the physical sciences in the United States, and is working to address some of the most pressing challenges of …
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Ray Turner Completes Last Tour of Lab Duty at JGI
… JGI’s Operations Deputy has come to a close as this previously retired Naval Commander retires from Berkeley Lab. For … home office (garage). There, standing at a safe distance, with proper face covering, was JGI’s Administrative Services … has been that. That person needs establish the culture of workforce safety and diversity and working together and …
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JGIota: The Algae Nicknamed ‘Chlamy’
… Berkeley plant biologist Sabeeha Merchant explains why she works on this alga, how researchers managed to sequence its genome, and what it has to teach us about other organisms – like plants. [ Editor’s Note: …
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