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Marine Microbe Contains Multitudes
… A deep dive into microbial genomics reveals one bacterial species is made of four ecologically distinct … from the warm, well-lit surface, to the blue-lit twilight zone, to the continuous pressure of the dark abyss, 4000 m (2.5 miles) … This research was supported by grants from the Simons Foundation (#329108 and #721223 to EFD) and Gordon and …
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PhycoCosm Tutorial
… Learn more about PhycoCosm, the largest interactive collection of sequenced algal genomes, omics data and comparative …
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A Collaboration to Improve Plant Genome Annotations Across Species
… Joint Genome Institute works in partnership with the HudsonAlpha Institute for Biotechnology, which specializes in … for plants. As part of that partnership, the JGI and HudsonAlpha researchers led a team that  recently published work … allowed us to pinpoint and rank biologically relevant and evolutionarily conserved genes that could be potential …
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Emiley Eloe-Fadrosh
… ecology and metagenomics. Her current research focuses on leveraging thousands of metagenomic datasets from host-associated and environmental samples to identify and characterize genomic information from uncultivated microbes and viruses. Prior to joining … ( magna cum laude ) PhD, Marine Biology, Scripps Institution of Oceanography …
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JGI Hosts GPU Hackathon in May
… high-performance computing resources, an upcoming hackathon led by the Oak Ridge Leadership Computing Facility … Office of Science user facility, aims to explore applications in the life sciences that can be ported to the GPU architecture. A GPU hackathon is a five-day coding event that offers participating …
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Toward More Reproducible, Reusable Stable Isotope Probing Experiments
… As SIP experiments shed more light on microbial communities than ever before — especially with … work to create FAIR datasets to maximize returns on these advances. Over the last two decades, Stable Isotope … of stable, heavy isotopes, SIP allows researchers to go beyond understanding which microbes are present in a sample, to …
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Cultivating Symbiotic Antarctic Microbes
… Nanohaloarchaeota cultures reveal they are symbionts and not free-living organisms. The Science Researchers … to experimentally determine that Nanohaloarchaeota are symbionts, rather than free-living organisms as had been … trove” of unknown microbes that play critical roles in environmental processes (related to interactions of soil-sediment …
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The fungus that made itself at home
… habitat. The Science By comparing genetic information from similar organisms, researchers have gained insights on why the dry rot ( Serpula lacrymans ) is so destructive … than its partner brown rots. The team’s results reflect the evolutionary gains and losses of S. lacrymans var. lacrymans …
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JGI announces final round of 2022 Functional Genomics awardees
… year, the JGI accepts proposals for state-of-the-art functional genomics research from potential users who need help translating genomic information into biological function. Through our CSP Functional Genomics call , we look for …
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Engagement Webinar: What Can You Do With An Approved CSP Functional Genomics Call Proposal?
… On July 8, JGI’s DNA Synthesis Science group held a  JGI Engagement: Accessing Functional Genomics Capabilities Webinar inviting researchers to … white papers to the Community Science Program’s  Functional Genomics call for proposals .  On July 8, JGI’s DNA … of Science User Facility  located at Lawrence Berkeley National Laboratory, is committed to advancing genomics in …
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Understanding Wildfire Recovery, Starting in Soil
… a microbiome of bacteria, viruses and fungi process carbon and nitrogen, paving the way for future plants and trees … at microbial genomes across a spectrum of burned soils. By connecting microbial genes with functions useful for forest recovery, this study sheds light on …
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Webinar: SIP technologies at EMSL and JGI
… The Environmental Molecular Sciences Laboratory (EMSL) and the Joint … of tools that leverage stable isotopes to measure carbon and nutrient flux, and identify microbes assimilating … labeled compounds. During this webinar, EMSL’s Mary Lipton and the JGI’s Rex Malmstrom provided background on the …
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