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An integrated metagenomic, metabolomic and transcriptomic survey of Populus across genotypes and environments
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Time-series metagenomics reveals changing protistan ecology of a temperate dimictic lake
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Persistent memory as an effective alternative to random access memory in metagenome assembly
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NMPFamsDB: a database of novel protein families from microbial metagenomes and metatranscriptomes
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IMG/PR: a database of plasmids from genomes and metagenomes with rich annotations and metadata
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Individual genome assembly from complex community short-read metagenomic datasets
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iPHoP: A Matchmaker for Phages and their Hosts
… nutrient cycling, or carbon sequestration. Summary Existing programs use a variety of approaches to match a virus with a … of Energy Joint Genome Institute, a DOE Office of Science User Facility at Lawrence Berkeley National Laboratory, … (https://ror.org/04xm1d337), a DOE Office of Science User Facility, is supported by the Office of Science of the …
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Gut Fungi: Unexpected Source of Novel Chemicals
… (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at Lawrence Berkeley National … Sciences Laboratory (EMSL), a DOE Office of Science user facility at Pacific Northwest National Laboratory. The … clearly have unexpected chemical potential. … This research project was supported by a grant from Santa Barbara Cottage …
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A One-Stop Shop for Analyzing Algal Genomes
… genomic data on algae into one place, PhycoCosm allows users to easily compile data that answers what genes are … analyze gene expression from published experiments; study DNA methylation, which gives clues to how an organism may … Genomes and Microbiomes (IMG/M) system for microbial and metagenome datasets, MycoCosm for comparative analysis of …
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Gene Expression: From On-Off Switch to Dial
… systems, expanding the technologies available for other JGI users outside the realm of bioenergy optimization. Summary … (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at Lawrence Berkeley National … a single RNA piece that recognizes a particular area in the DNA, to determine which targets might benefit from an …
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Functional characteristics of an endophyte community colonizing rice roots as revealed by metagenomic analysis.
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Differences in sequencing technologies improve the retrieval of anammox bacterial genome from metagenomes
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