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Proteome specialization of anaerobic fungi during ruminal degradation of recalcitrant plant fiber
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Tomas Tyml
Tomas uses traditional cultivation methods along with microscopy and genomics to study endosymbiotic associations within microbial eukaryotes. He hopes to broaden our …
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Cultivating Symbiotic Antarctic Microbes
Nanohaloarchaeota cultures reveal they are symbionts and not free-living organisms. The Science Researchers … consequences of microbe-microbe interactions. Using metagenomes recovered directly from environmental samples … an obligate symbiont—entirely dependent on the other for required nutrients—is genome size. The obligate symbiont’s …
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Effects of Polar Light Cycle on Microbial Food Web
Populations of Antarctic lake microbial communities change with the … aligned with light availability. A long-running time-series study offers a first glimpse into a full season’s cycle of … of algae and viruses to the ecosystem were noted, but require further exploration. … This work was supported by the …
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Olpidium, The Key to the Origin of Terrestrial Fungi
Before 2006, Olpidium was one of the many obscure fungi of Chytridiomycota (the … for an extended period of time, which would be rather intriguing given the lack of selective pressure on retaining the … data were generated, bioinformatic tools for binning metagenome data involved with mainly eukaryotic origins were …
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JGI Scientists Pen Genome Watch Articles
… of Science User Facility located at Lawrence Berkeley National Laboratory, are sharing their expertise in … relate to energy and the environment.” she says. “So, it’s quite a natural fit and a nice complement to the … characterizing the human microbiome  by its genomes and metagenome , rather than just by 16S ribosomal RNA gene …
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Year in Review: JGI’s 2018 Progress Report Available Now
The latest edition of the JGI Progress Report highlights notable research and scientific collaborations in 2018. The cover is an image of Mono Lake, a saline …
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Taking Stock of the Known and Unknown Microbial Space
… of Science User Facility located at Lawrence Berkeley National Laboratory Berkeley Lab), have taken stock of the … sequence data generated over the past three decades, their study assesses what fraction of the microbial diversity we … genes on nearly 2 million genomes, including isolates, metagenome-assembled genomes (MAGs) with varying quality …
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NeLLi — Symposium on New Lineages of Life
The DOE Joint Genome Institute hosted the hybrid “NeLLi 2023 Symposium” delving into the most recent expansions of the Tree of Life and latest discoveries toward the … Schulz,  New Lineages of Life Lead Emiley Eloe-Fadrosh, Metagenome Program Tanja Woyke, Microbial Program Robert …
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New Research Sheds Light on Diversity in the Deep Sea
… array of microorganisms adapted to living in extreme conditions. At these vents, and underwater volcanoes,  … becoming an extremely hot, mineral-rich hydrothermal fluid. Eventually, that fluid is expelled back into the ocean … Laboratory, contributed metagenomic sequencing to the study as well as  genome analysis, providing authors a more …
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Extracting the Secrets of Secondary Metabolites
… biosynthetic gene clusters.  The Science Microbial secondary metabolites, those molecules not essential for growth … now be easier to characterize following a proof-of-concept study in which researchers paired CRISPR and CRAGE … and releases toxins into the insect’s bloodstream that quickly kill the host. Understanding exactly how P. …
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Help from Citrus’ Bitter, Hardier Cousin
… yields clues to disease-resistance that could prove fruitful for saving Citrus from greening disease. You’ve … never heard of trifoliate orange. Otherwise known as  Poncirus trifoliata , it’s an evolutionary cousin of the  … JGI collaborator, are senior authors of the  recent study published in  The Plant Journal.  this study included …
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