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The Power of One, Amplified
… A preview of how large-scale single cell genomics complements metagenomics studies. The Science Researchers demonstrated the value of conducting large-scale single cell genomics by collecting nearly … University of Calgary and the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science …
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Mapping Heat Resistance in Yeasts
… A new approach for improving functional annotation in fungal genomes. The Science In … across very distant species that no longer mate to produce progeny. The ability to pinpoint which genes underlie … diversity in traits relevant to U.S. Department of Energy (DOE) missions in energy and environment. Summary There are …
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Climate Change Threatens Base of Polar Oceans’ Bountiful Food Webs
… warm-adapted microbes edge polewards, they’d oust resident tiny algae. The cold polar oceans give rise to some of the … base are microscopic, photosynthetic algae. But human-induced climate change , a new study suggests, is displacing … led by UEA and including the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science …
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A Grass Model to Help Improve Giant Miscanthus
… Miscanthus  sequence offers insights into benefits of polyploidy and perenniality. The … improving their abilities to adapt to extreme environments such as poor soils and drought. The reference genome for M. … and Bioproducts Innovation (CABBI), a Department of Energy (DOE) Bioenergy Research Center, along with researchers from …
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XA21-mediated resistance to Xanthomonas oryzae pv. oryzae is dose dependent
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Data Discovery Tool Helps Identify Microbial Roles within Metagenomes
… Protein annotations provide insights into environmental … The work is of interest to the Department of Energy (DOE) Office of Science’s Biological and Environmental … their ratios of small DNA sequence fragments called tetranucleotides, are a way to measure the collection of the …
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A Better Way to Find RNA Virus Needles in the Proverbial Database Haystacks
… Team develops a computational pipeline to sift and characterize RNA virus sequences.  A zoo … Information, and the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science … information is encoded in DNA, with RNA delivering the instructions inside DNA to the cell, RNA viruses store their …
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Plotting a Model for Virus-Host Warfare Deep Below Ground
…   Visualizing a novel, candidate viral genome found in the deep … The battle waged below the Earth’s surface is reconstructed by combining a study of microbial communities … and included researchers at the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science …
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Tracing the Evolution of Shiitake Mushrooms
… New genomes highlight the diversity of white rot fungi in the genus Lentinula   The Science Shiitake mushrooms get … for converting plant waste into sugars for  biofuel production. Additionally, these fungi play a role in the global  … Science Program (CSP) at the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science …
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Evolution of a Fungal Gene Expression Regulator
… Describing the largest analysis to date of the modified DNA base … or G in a genome sequence can lead to changes in protein structures and functions, but the DNA bases themselves can also … Fungal Genomes initiative of the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science …
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John Vogel
… Dr. Vogel joined JGI in 2014 to establish a plant functional genomics program. Prior to this, he served as a Research Molecular … in an effort to create improved varieties for biomass production. He did his postdoctoral studies at the Carnegie … grass that is well suited to experimental manipulation in the laboratory because of its compact genome, diploid …
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Jane Grimwood Named HudsonAlpha Genomics Chair
… Congratulations to Jane Grimwood, who has been appointed the Loretta Purdy Spencer Chair in Genomics at the … Genome Sequencing Center. Grimwood heads the Library Construction group for the JGI Plant Program . Her collaborations … and the JGI. Building off this work, researchers at three DOE Bioenergy Research Centers (BRCs) have expanded the …
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