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Analyze Data
… The JGI supports the entire data life cycle — from experimental … efforts to integrate data in support of new research questions that span domains. We also work with our partners to build infrastructure in support of new analysis techniques.  Notice Data …
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Offerings & Capabilities
… The central mission of the JGI’s Genomic Technologies department is   … have access to cutting-edge capabilities to help advance their science by generating data in three overarching … metabolomic, imaging, sensor, and other data produced at scales amenable to statistical analysis. To meet …
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A Plant Root Atlas for Tracking Developmental Trajectories
… zu Berlin   has developed an atlas that maps gene expression patterns in the  Arabidopsis root, profiling nearly … the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at … Phytozome and will be available for future single-cell projects.” The Berkeley Lab  Biosciences Area has been …
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Natural Prodcast
… is a “fireside chat”-style podcast about natural products and the science and scientists of secondary metabolism. Natural products, secondary metabolites, … to medicine, the environment, and human health. As the JGI acts on its goals in — and builds out its capabilities …
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Polar Phytoplankton Need Zinc to Cope with the Cold
… Antarctic algae need their vitamins; zinc fuels some of their most important functions. Even in the chilly waters of Antarctica, tiny … zinc-binding proteins are important for primary metabolism such as photosynthesis and gene regulation.  Mock and his … of Science User Facility  located at Lawrence Berkeley National Laboratory, is committed to advancing genomics in …
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Defining a Pan-Genome for Antarctic Archaea
… The Science Haloarchaea flourish in hypersaline environments, and researchers are interested in learning how … regional and global biogeography of haloarchaea and the structure and extent of the Antarctic microbial pan-genome. … extreme temperature and salinity conditions, understanding their adaptations offers insights into microbial evolution, …
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Whole-genome sequencing and intensive analysis of the undomesticated soybean (Glycine soja Sieb. and Zucc.) genome
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You Can Move, But You Can’t Hide
… and spread from cell to cell. Two of the most common forms of MGEs are viruses and plasmids. They can be found … called geNomad identifies and classifies MGEs based upon their gene content and their genetic sequences. The software … can affect a microbe’s ability to cycle nutrients or produce new chemicals. They can also affect ecosystems by …
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Corymbia Genome Expands Terpene Synthesis Knowledge
… Genome annotations of two C. citriodora subspecies broaden understanding of the terpene synthase gene family across eucalypt lineages. The Science From the distinct smell of … Terpenes are also economically important because of their use in industrial materials, pharmaceutical products, …
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Fungus Fuels Tree Growth
… Researchers start pinning down how a fungal symbiont spurs growth of poplar, a potential biofuel feedstock.   … still not well understood — scientists can better fine-tune their engineering efforts of both plants and root … or mycorrhizal fungi (mutualist symbionts that induce structural changes in plant roots),  M. elongata  …
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Marine Microbe Contains Multitudes
… A deep dive into microbial genomics reveals one bacterial species is made of four ecologically distinct … at different depths. In order to determine the genome structure of SAR324 cells and their gene expression, the team then sequenced community … Moore Foundation grant GBMF #3777 (to EFD). The work conducted by the US Department of Energy Joint Genome Institute, …
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The Surprising Structure of a Shrub Willow Sex Chromosome
… hermaphrodites, expressing both male and female gametes in one individual. But some, including shrub willow  Salix … have been sequenced with sufficient resolution to analyze their structure. Scientists found both a gene likely important for … Key Project for Basic Research (2012CB114504). The work conducted by the U.S. Department of Energy Joint Genome …
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