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A Grass Model to Help Improve Giant Miscanthus
… and more complex patterns of inheritance. The additional genes provided by these chromosomes can contribute to novel … nutrients from one growing season to the next. By studying genes that are turned “on” or “off” at different times and in different parts of the plant, the team identified genes that may regulate nutrient transport to and from the …
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Natural Prodcast Episode 7: Ben Shen
… niches from which potentially natural product could be biosynthesized, then you need to develop enabling technologies. …
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JGI@25: Cow Rumen and the Early Days of Metagenomics
… environmental samples — to identify over 27,000 microbial genes. These genes were identified based on their potential to … into larger and coherent pieces called contigs — into genes and even into genomes — from these environmental …
Learn more
A Grass Model to Help Improve Giant Miscanthus
… and more complex patterns of inheritance. The additional genes provided by these chromosomes can contribute to novel … nutrients from one growing season to the next. By studying genes that are turned “on” or “off” at different times and in different parts of the plant, the team identified genes that may regulate nutrient transport to and from the …
Learn more
The More the Merrier: Making the Case for Plant Pan-genomes
… of flowering plants multiply. Over time, plants lose many genes after such events, returning their genomes to a diploid state while retaining multiple copies of some genes. This polyploidization process is ongoing and many … pan-genome. A pan-genome is the nonredundant set of genes found in a species, but in this case, the team …
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Better Crops With a Pointillist Approach to Plant Genomics
… using measurements from single cells to understand which genes help plants grow, get nutrients, weather drought, and …
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Polar Phytoplankton Need Zinc to Cope with the Cold
… peering into the function and activity of phytoplankton genes and looking at how communities of these microalgae … alga Microglena sp. YARC, which also contains expanded genes for proteins requiring zinc. Co-expression analysis as …
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Fungal Friends or Foes in Plant Roots
… genomes on the JGI data portal MycoCosm . They looked for genes known to be involved in fungal-host interactions and … fungi that live within plants (endophytes). These include genes that degrade plant cell walls and break down plant …
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Finding the Fermenters
IMG data portals to get information about the genomes and genes of the organisms on the list. They also searched IMG/M for all protein-coding genes belonging to each genome. The final dataset – … 8,350 organisms along with 4,355 genomes and 13.6 million genes. The results reveal that fermentative metabolism is …
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An Automated Tool for Assessing Virus Data Quality
… these sequences may be tainted by the presence of non-viral genes. Up to this point, there has been a lack of fast and … (contigs) of proviruses flanked on one or both sides by genes from the host organism. With the virus-host boundary … methods, it was possible to distinguish between metabolic genes found in the viral genome versus those from the host …
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Genetic and Functional Diversity Help Explain Pathogenic, Weakly Pathogenic, and Commensal Lifestyles in the Genus Xanthomonas
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New Research Finds Flagella in the Terrestrial Roots of Marine Bacteria
… loss of cell walls and a complex pattern of evolution for genes related to eating plant compounds in both the oceanic …
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