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Diel rewiring and positive selection of ancient plant proteins enabled evolution of CAM photosynthesis in Agave
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Mapping the membrane proteome of anaerobic gut fungi identifies a wealth of carbohydrate binding proteins and transporters
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Arabidopsis C‐terminal binding protein ANGUSTIFOLIA modulates transcriptional co‐regulation of MYB46 and WRKY33
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Mutation of SHOC2 promotes aberrant protein N-myristoylation and causes Noonan-like syndrome with loose anagen hair
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A One-Stop Shop for Analyzing Algal Genomes
… algal genomes can be incredibly complex and difficult to sequence and understand. A team of researchers led by Algal … may tune gene expression; and investigate corresponding proteins. PhycoCosm’s built-in connection to the DOE Systems … Genomes and Microbiomes (IMG/M) system for microbial and metagenome datasets, MycoCosm for comparative analysis of …
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Natural Prodcast Episode 1: The Primer, Part 1
… so now here at the JGI, I work with all of the sequencing data that the JGI produces to try to find and identify … and to do research to get a better understanding of that data. ALISON: Awesome. So tell me why should I even care … about terms and so I will probably end up interchangeably using the term secondary metabolite and specialized …
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Enlarging Windows into Understanding Gene Functions
… features and functions. Making connections between the structures and functions of the genes encoded in the genome … after she left the JGI. “Biotin DAP-seq is a unique quick protein purification approach,” O’Malley said. “It provides … TFs and regulatory networks are conserved across fungi.” Using multiDAP-seq, Nagy’s team is comparing five fungal …
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Functional analysis of Salix purpurea genes support roles for ARR17 and GATA15 as master regulators of sex determination
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Comparative transcriptomics uncovers poplar and fungal genetic determinants of ectomycorrhizal compatibility
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Metagenome Sequence Analysis of Filamentous Microbial Communities Obtained from Geochemically Distinct Geothermal Channels Reveals Specialization of Three Aquificales Lineages
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Trent Northen
… leadership roles within large DOE-funded research programs using mass spectrometry for energy and environmental … to JGI users.  Dr. Northen’s research is focused on using metabolomics to link genomes with environments to … E et al. Probing the active fraction of soil microbiomes using BONCAT-FACS. Nat Commun. 2019 10(1):2770. doi: …
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Metagenomes in the Borderline Ecosystems of the Antarctic Cryptoendolithic Communities
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