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CoverM: Read alignment statistics for metagenomics.
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Tina Clarke
… Ms. Clarke joined the Lab in 2007 as the Sr. Human Resources Division Partner for the Joint BioEnergy Institute (JBEI) and in 2017 joined the Joint Genome Institute (JGI). Tina serves in an HR advisory role to Division/Area management and supervisors to recommend solutions and …
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Twenty-five years of Genomes OnLine Database (GOLD): data updates and new features in v.9.
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Improving the Cacao Genome and Phytozome
… by a Mars, Inc.-led consortium through the Cacao Genome Database project. The genome sequence was assembled by the … improved  T. cacao Matina 1-6 genome is now available for comparative purposes on the latest version of the JGI plant … was developing a high quality node for cacao used for systemic orthology to enable use for both cacao functional …
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John Vogel
… Dr. Vogel joined JGI in 2014 to establish a plant functional genomics program. Prior … mutant collections, transformation technology, epigenetic analysis techniques) and utilizing these resources to … with their microbiomes. In addition, his group conducts comparative genomic research to understand the evolutionary …
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Computational Strategies for Scalable Genomics Analysis
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A Guide to Gene‐Centric Analysis Using TreeSAPP
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NAP: The Network Analysis Profiler, a web tool for easier topological analysis and comparison of medium-scale biological networks
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An Integrative Computational Approach for Prioritization of Genomic Variants
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MAGI: A Method for Metabolite Annotation and Gene Integration
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TRIMER: Transcription Regulation Integrated with Metabolic Regulation
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Time‐series metatranscriptomes reveal conserved patterns between phototrophic and heterotrophic microbes in diverse freshwater systems
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