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PolyCRACKER, a robust method for the unsupervised partitioning of polyploid subgenomes by signatures of repetitive DNA evolution
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Genome evolution and transcriptome plasticity is associated with adaptation to monocot and dicot plants in Colletotrichum fungi.
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Genomic determination of breeding systems and trans-specific evolution of HD MAT genes in suilloid fungi.
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Insights into the red algae and eukaryotic evolution from the genome of Porphyra umbilicalis (Bangiophyceae, Rhodophyta)
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Contrasting Patterns of Sequence Evolution at the Functionally Redundant bric à brac Paralogs in Drosophila melanogaster
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Len Pennacchio
… his Ph.D in 1998 from the Department of Genetics at Stanford University where he uncovered the genetic cause of a … Deputy include interacting with users seeking to exploit new genomic technologies and providing a vision for future … technical JGI directions for DOE User science. … Complete Publications Genomic Technologies Program Defining the vast …
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JGI Scientists Pen Genome Watch Articles
Woyke and other JGI researchers made their debut writing for the Nature Reviews Microbiology column last year — and … of Science User Facility located at Lawrence Berkeley National Laboratory, are sharing their expertise in … Igor Grigoriev took readers on a quick romp through the  evolution and domestication of yeast , a model eukaryote. …
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Cultivating Symbiotic Antarctic Microbes
Nanohaloarchaeota cultures reveal they are symbionts and not free-living organisms. The Science Researchers … of an obligate symbiont—entirely dependent on the other for required nutrients—is genome size. The obligate … , a team led by Rick Cavicchioli at the University of New South Wales along with researchers at the U.S. …
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Making a Lichen Together
For the first time, a team analyzes the transcriptomes of a … clearly. The Science The humble lichen is a superorganism: one being that is actually comprised of two (or more) … (usually belonging to the ascomycetes, one of the two main branches of fungi); another is a photosynthetic microbe, …
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The Surprising Structure of a Shrub Willow Sex Chromosome
… is characteristic of the sex chromosomes of mammals is, for the first time, seen in a plant. The Science Sex in … some, including shrub willow  Salix purpurea , employ the evolutionary strategy we are far more familiar with: … mechanisms of sex determination could also lead to new approaches to accelerate flowering, which can speed the …
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Tanja Woyke
… was the symbiont community of a gutless oligochaete for which she deciphered function and host-symbiont … lineages in the dark ocean. Science 333, 1296-1300. Newton et al. 2007. The Calyptogena magnifica … User Programs … Education … Awards and Service … Selected Publications …
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Tracking the Origins of Methane-Producing Microbes
… cycle. All methanogenic archaea use one of three pathways for methanogenesis: hydrogen-dependent and CO2-reducing, or … collected. The team noticed some of the genomes diverged evolutionarily from other previously discovered genomes. … These two things combined led us to conclude that our new methanogen did not belong to the Euryarchaeota, the …
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