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Calculating the Costs of Multiple Switchgrass Gene Copies
… A collaborative team led by researchers at the University of Texas (UT) at Austin, the HudsonAlpha Institute for Biotechnology (HudsonAlpha), and the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User … More genome copies in switchgrass leads to increased climate …
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Assembly and Succession of Iron Oxide Microbial Mat Communities in Acidic Geothermal Springs
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FinisherSC: a repeat-aware tool for upgrading de novo assembly using long reads
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Informatics Advisory Committee
… The IAC is chartered by the JGI Chief Informatics Officer (CIO) and reports to the JGI Director. The … on the effective management and strategic objectives for the JGI’s data science, informatics and information …
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A One-Stop Shop for Analyzing Algal Genomes
… data portal allows anyone to freely investigate the genes of more than 100 algae. The Science Interested in the genomes of algae? You now have one place where you can … Understanding the genetic underpinnings responsible for these traits takes us closer to harnessing algae for …
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DAP-seq Drives Robust Mapping of Gene Regulation
… Multi-species assays yield an unprecedented view of plant evolution and adaptation.    Understanding how … Berkeley National Laboratory. “These proteins’ binding preferences are very, very stable over long evolutionary … criteria provides a robust community dataset of improved quality; deep insights identify the most important binding …
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Bacteria and Fungi Divvy Up the Work in Forest Floor
… analyzing the enzymes present in the complex organic matrix of the forest floor, a team of researchers have found that … to identify proteins, the team compiled DNA sequences (metagenomes) and messenger RNA sequences (transcriptomes) from … and metatranscriptome sequences, as well as individual reference fungal genome sequences assembled as part of its …
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Learning to Look
… “Where’s Waldo?” readers need to look for a number of distinguishing features. Several characters may be … by scientists at the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User … tool Roux and his colleagues developed first worked on a reference dataset that included genome sequences known to be …
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Fungal community assembly in drought-stressed sorghum shows stochasticity, selection, and universal ecological dynamics
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Functional Metagenomics of Spacecraft Assembly Cleanrooms: Presence of Virulence Factors Associated with Human Pathogens
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Ecological Assembly Processes Are Coordinated between Bacterial and Viral Communities in Fractured Shale Ecosystems
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The Megadata of Lake Mendota - Part 1: Many, Many Mers
… Lake Mendota sits right next to the University of Wisconsin, Madison. And Trina McMahon's lab has been … So a few years ago, when they set out to analyze 500 metagenomes, it was the biggest project the JGI had ever put … this episode: the software evolution that made metagenome assemblies like this possible. …
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