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Fishing for Novel Cellulose Degraders
… genomic approach to bioprospecting. The Science One of the most vital pieces of equipment for fly fishing is a boxful of lures. Designed with feathers … by protein in vitro expression and mass spectrometry-based enzyme activity assay. The work was  reported in  The …
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Identifying the Microbial Cleanup Crew at a Superfund Site
… the microbial community involved in a bioremediation effort. The Science In 1999, the Environmental Protection … PCE (perchloroethylene) found its way into the groundwater of several communities in New Mexico via leakage from a … bioremediate toxic substances has led to the development of cost-effective environmental cleanup strategies. Summary …
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Plotting a Model for Virus-Host Warfare Deep Below Ground
Science Altiarchaea are carbon-fixing microbes and targets of multiple viruses in Earth’s deep subsurface. They are abundant representatives of deep subsurface ecosystems. A team of researchers … fresh organic carbon which can serve as a food source for other microbes into the environment. Summary In J. R. R. …
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Fungus Fuels Tree Growth
… start pinning down how a fungal symbiont spurs growth of poplar, a potential biofuel feedstock.     The Science The fungus  Mortierella … always found among and within poplar trees, and in an effort to understand its influence on the plant, a team of …
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A Revamped Amplification Method that Enables Nearly Complete Single-Cell Genomes
… from single cells. The Science Studying the  genomes of microorganisms is incredibly useful for understanding the microbiome of the earth, but most species do not grow easily in the …
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When “The Blob” Made It Hotter Under the Water
Data from marine heatwave event may foreshadow climate change impact on marine microbial communities. The Science A team of researchers tracked the impact of a large-scale heatwave … … This work was performed under the auspices of the Scientific Committee on Oceanographic Research (SCOR), the …
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Green Algae Reveal One mRNA Encodes Many Proteins
… a single protein. Recently reported in the Proceedings of the National Academy of Sciences , a team of researchers … research team included scientists at the University of California (UC), Berkeley, UCLA, UC Davis, Brookhaven National … and computational analysis that enable systems-based scientific approaches to these challenges.  DOE’s Office of …
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Applying Viral Genomics Expertise to Understanding the Human Virome
JGI researchers lend expertise to develop tools and data hub for NIH program. While the microbes in, on and around Earth … viruses outnumber the microbes by at least another order of magnitude. For years, scientists at the DOE Joint Genome … and computational analysis that enable systems-based scientific approaches to these challenges.  DOE’s Office of …
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JGI Earth Month: Kjiersten Fagnan Reflects on Shelter-in-Place Effects
In   April 2020, we mark both the 50th celebration of Earth Day on April 22, and DNA Day on April 25.  On March 17, 2020, a shelter-in-place order for all residents took effect in six San Francisco Bay Area … and computational analysis that enable systems-based scientific approaches to these challenges.  DOE’s Office of …
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JGI Earth Month: Wetlands Work in #TenHundredWords
April marks both the 50th celebration of Earth Day on April 22, and DNA Day on April 25. As both … living on a changing planet. Mo Kaze is a University of California (UC), Merced graduate student working with  Susannah … and computational analysis that enable systems-based scientific approaches to these challenges.  DOE’s Office of …
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Accelerating Metagenomics Discoveries with Deep Learning
… participants in an online workshop to harness deep learning for metagenomic data.  Metagenomic data, or DNA sequencing … insights from metagenomic data. In deep learning, a branch of machine learning, data is passed through algorithms … and computational analysis that enable systems-based scientific approaches to these challenges.  DOE’s Office of …
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Polar Phytoplankton Need Zinc to Cope with the Cold
Antarctic algae need their vitamins; zinc fuels some of their most important functions. Even in the chilly waters … other oceans. That zinc turns out to be extremely important for polar phytoplankton.  After peering into the function … and computational analysis that enable systems-based scientific approaches to these challenges.  DOE’s Office of …
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