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Complete genome sequence of DSM 30083T, the type strain (U5/41T) of Escherichia coli, and a proposal for delineating subspecies in microbial taxonomy
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A 34K SNP genotyping array for Populus trichocarpa: Design, application to the study of natural populations and transferability to other Populus species
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The More the Merrier: Making the Case for Plant Pan-genomes
… system traces polyploid genome evolution. Flowering plants abide by the concept, “the more the merrier,” … plants; at least once during their evolution, the genomes of flowering plants multiply. Over time, plants lose many … of the polyploid reference line is simply not true based on previous pan-genome studies. Thus, we must compare …
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JGI on the 2020 Highly Cited Researchers List
… those recognized by Clarivate Analytics as “true pioneers in their fields over the last decade, demonstrated by the production of multiple highly-cited papers that rank in the top 1% by … that  released a very high quality reference genome sequence of green millet ( Setaria viridis ) in  Nature …
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Metagenome Sequence Analysis of Filamentous Microbial Communities Obtained from Geochemically Distinct Geothermal Channels Reveals Specialization of Three Aquificales Lineages
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10 From JGI on the 2019 Highly Cited Researchers List
… Clarivate Analytics, formerly the IP & Science arm of Thomson Reuters, has released their 2019 list of Highly … Nature Genetics, the work is part of a long-term project to sequence, annotate and analyze the genomes of more than 300 … for an uncultivated virus genome, including the source, methods of identification of the virus genome, and data …
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JGI-USCCN Strain Sequencing Opportunity
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Data shopping in an open marketplace: Introducing the Ontogrator web application for marking up data using ontologies and browsing using facets
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The Surprising Structure of a Shrub Willow Sex Chromosome
… A genetic architecture that is characteristic of the sex chromosomes of mammals is, for the first time, seen in a plant. The Science Sex in plants can be befuddling. … first time, the sex chromosomes of shrub willow have been sequenced with sufficient resolution to analyze their …
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A survey of computational approaches for characterizing microbial interactions in microbial mats
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Bacteria and Fungi Divvy Up the Work in Forest Floor
… analyzing the enzymes present in the complex organic matrix of the forest floor, a team of researchers have found that … So, to be able to identify proteins, the team compiled DNA sequences (metagenomes) and messenger RNA sequences … was able to identify enzymes in the soil and who made them. Based on data reported in the April issue of Soil Biology …
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A Better Way to Find RNA Virus Needles in the Proverbial Database Haystacks
… Team develops a computational pipeline to sift and characterize RNA virus sequences.  A zoo once offered a coloring book featuring polar bears in winter … The U.S. Department of Energy Joint Genome Institute, a DOE Office of Science … sequencing and computational analysis that enable systems-based scientific approaches to these challenges.  DOE’s …
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