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The Megadata of Lake Mendota - Part 1: Many, Many Mers
… Lake Mendota sits right next to the University of Wisconsin, Madison. And Trina McMahon's lab has been sampling the … assembly from Lake Mendota. In this episode: the software evolution that made metagenome assemblies like this possible. …
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Horizontal gene transfer in Histophilus somni and its role in the evolution of pathogenic strain 2336, as determined by comparative genomic analyses
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Cultivation of novel Atribacterota from oil well provides new insight into their diversity, ecology, and evolution in anoxic, carbon-rich environments
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JGI-USCCN Strain Sequencing Opportunity
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Tina Clarke
… Ms. Clarke joined the Lab in 2007 as the Sr. Human Resources Division … State University. Early on, Ms. Clarke knew the importance of understanding human and group behaviors as her role in HR … and trust. Ms. Clarke is very enthusiastic to be a part of the Berkeley Lab’s first Conflict Resolution Services …
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A Collaboration to Improve Plant Genome Annotations Across Species
… which specializes in genome improvement for plants. As part of that partnership, the JGI and HudsonAlpha researchers led … allowed us to pinpoint and rank biologically relevant and evolutionarily conserved genes that could be potential future targets for …
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The Expanding Universe of Methane Metabolisms in Archaea
… Metagenome-assembled archaeal genomes provide new insights into an ancient metabolism. Methane is a greenhouse … gas 20 times more potent than carbon dioxide. Billions of years ago, methane-producing archaea likely played a key … important to understand early life, but also to link the evolution of this metabolism to geochemical data, which in …
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JGI Workshop at SIMB NP Meeting
… Metabolism   Although there are still a large number of secondary metabolites yet to be discovered and their biosynthetic logics to be understood, accessing these untapped metabolic capabilities is often tedious … resources needed to predict BGCs from available genome sequences. The DOE Joint Genome Institute (JGI), a DOE …
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A chromosome‐scale reference genome of trifoliate orange (Poncirus trifoliata) provides insights into disease resistance, cold tolerance and genome evolution in Citrus
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Genome analysis of ‘Candidatus Ancillula trichonymphae’, first representative of a deep‐branching clade of Bifidobacteriales, strengthens evidence for convergent evolution in flagellate endosymbionts
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Directed Evolution of Flavin-Dependent Halogenases for Site- and Atroposelective Halogenation of 3‑Aryl-4(3H)‑Quinazolinones via Kinetic or Dynamic Kinetic Resolution
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Bacteria and Fungi Divvy Up the Work in Forest Floor
… second fiddle to those from fungi when it comes to breaking down tough plant fibers. The Science Walk in a temperate … analyzing the enzymes present in the complex organic matrix of the forest floor, a team of researchers have found that … So, to be able to identify proteins, the team compiled DNA sequences (metagenomes) and messenger RNA sequences …
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