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Exploring and expanding the natural chemical space of bacterial diterpenes
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Modulation of sensory perception by hydrogen peroxide enables Caenorhabditis elegans to find a niche that provides both food and protection from hydrogen peroxide
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Transcriptomics reveal a mechanism of niche defense: two beneficial root endophytes deploy an antimicrobial GH18‐CBM5 chitinase to protect their hosts
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Filling in the Plant Tree of Life
… plants and how they adapt to their ever-changing environments better? We could unlock new innovations to drive more productive food, medicine, and bioenergy … are from narrow swaths of the plant tree of life. One project aims to change that. …
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Simon Roux
… research as part of the Metagenome Program. His responsibilities include the development of novel computational tools to identify virus sequences, the design of new … approaches to link viruses to their host(s), collaboration with JGI users for analyzing viral datasets, and the …
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Supporting Global Research into Actinomycetes
… a public portal of insight into special groups of actinobacteria Streptomyces is more than just a funny word. The 500 species described within the group are responsible for roughly two-thirds of antibiotics, and a deeper understanding of the bacteria potentially holds the key to discovering new …
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Tracing the Evolution of Shiitake Mushrooms
… genus Lentinula, which have evolved to decompose hardwoods on every continent besides Europe and Antarctica. A  new analysis … diversity between cultivated and wild shiitake populations. The Impact Lentinula mushrooms are white rot fungi, … award 0000238431 to D.H., the GENOBIOREF (BIO2017-86559-R) project of the Spanish Ministry of Science and Innovation …
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Katherine Louie
… became Platform Lead where she manages metabolomics production for community sequencing projects and heads R&D efforts to expand the metabolomics … rich metabolite profiles from diverse biological and environmental samples in support of user science.  Capabilities …
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JGI@25: Following Fungi that Pry Apart Plant Polymers
… number of notable achievements that showcase our collaborations and capabilities to enable great science that will help … to find beautiful diversity.”  Within that diversity of bacteria and fungi, O’Malley and her team are amassing all … into biochemical production.    Over time, as these projects have delivered results, they have also snowballed …
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From Intern to Published Scientist: The Journey of a JGI-UC Merced Intern
… For many scientists, the culmination of their work into a written report that is published in … the primary author on this publication and drove the entire project, Visel explained. She continued working virtually … Practical Applications for Fungi Wint began working on the project that culminated in this publication during her …
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How Filamentous Fungi Sense Food
… of California, Berkeley used a multi-omics approach to reconstruct and model gene regulatory pathways used by the … proposal akin to the Encyclopedia of DNA Elements (ENCODE) project, which is aimed at determining the activity, … the work being done as part of the 1000 Fungal Genomes Project. Funding for the project was also provided by the …
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JGI@25: Fueling Investigation into Methane-Making Microbes
… In honor of the JGI's 25th anniversary in 2022, we have … Hungate1000, a catalog of 410 rumen microbe genomes. The project relied upon resources from laboratories around the … research offshoots in totally different areas, beyond the project’s initial scope. Sequencing and culturing this vast …
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