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Researching and Solving Real-World Problems with the 2023 JGI-UC Merced Interns
… Study of Root Colonization by Resident Phages of a Plant Growth Promoting Rhizobacterium Graduate Interns … A Comparative Analysis of Metabolic Pathways in Fungal Pathogens Shayna Bennett and mentor Robert Bowers, Mobile … and Exploring Novel BGC Detection Techniques on Fungal Genomes Video Transcript: Emerald Nash : What I’m working on …
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Scaling Up Existing Skill Sets
… internship opportunities in fields ranging from plant-microbe interactions to functional genomics. Hear from five of the Summer … in Quantitative and Systems Biology Mentor: Guohong Wu, Plant Comparative Analysis What effect has your summer …
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Nikos Kyrpides
… of the comparative analysis platforms for microbial genomes and metagenomes (IMG). He became the Metagenomics Program head in … at the University of Illinois at Urbana-Champaign and at Argonne National Laboratory. Dr. Kyrpides’ research focus on … BA in Biology, Aristotle University of Thessaloniki, Greece PhD in Molecular Biology and Biotechnology, …
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Eelgrass Proves to Be Much Younger Than We Thought
… Recent study shows eelgrass has been around about 2.5 million years less than previously believed.  The Science Eelgrass, one of the most abundant plants in the ocean, originated in Japan before spreading … Their research, published in  August 2023 in  Nature Plants , was able to assess absolute time estimates for …
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First Monoploid Reference Sequence of Sugarcane
… Most species are diploids and have two sets of chromosomes, one from each parent. In contrast, many crops have multiple … of chromosomes (they are “polyploid”) and their complex genomes are more difficult to sequence and assemble, in turn … crop that very efficiently converts solar energy into plant biomass, which can then be crushed to extract the …
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Bacteria and Fungi Divvy Up the Work in Forest Floor
… Bacterial enzymes play second fiddle to those from fungi when it comes to breaking down tough plant fibers. The Science Walk in a temperate forest filled … to identify proteins, the team compiled DNA sequences (metagenomes) and messenger RNA sequences (transcriptomes) from …
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RECAP: Keynote Speakers Talk Innovation at 2022 JGI Annual Meeting
… The JGI was honored to host some of the brightest minds in genetics as … . Susan Wessler , UC Riverside Shaping up conservative genomes Keynote Talk Title: Transposable Element-Mediated … Variation — From McClintock to Pangenomes Susan Wessler is plant molecular biologist and geneticist and currently a …
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Natural Prodcast Episode 22: Alison Narayan
… DAN UDWARY: Hey everyone. Welcome back to Natural Prodcast. This continues the series of interviews we recorded at the Society … Products meeting earlier this year. And today we have our conversation with Professor Alison Narayan, from the … In this episode, Dan and Jackie talk to Alison Narayan , from the University of Michigan’s Life Sciences …
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An Integrated Dataset to Understand Ecosystem Interaction
… tree and soil dataset for understanding the dynamic relationship between poplar trees and their microbial partners. … researchers came from two environments: natural forests and plantations managed through human intervention. By … (Berkeley Lab). All of this information — 318 metagenomes, 98 plant transcriptomes and 314 metabolomic …
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JGI@25: Fueling Investigation into Methane-Making Microbes
… In honor of the JGI's 25th anniversary in 2022, we have … reason for studying rumen: Livestock live off plant matter, and their rumen are highly capable of breaking … has partnered with researchers around the world to map out genomes of rumen microbes. In 2018, through a JGI Community …
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Enlarging Windows into Understanding Gene Functions
… JGI innovates protocol revealing how genetic variations in sequences affect traits. In a text file, the rows of … it can also serve as a stepping stone to studying many genomes simultaneously through multiDAP, which allows … species to answer questions about how they break down plant materials, which could be useful for industrial …
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Building Wet and Dry Lab Skills
… Summer 2025 marked the second year of Alabama A&M University students coming to the … Mikes worked with mentors Yi Zhai and John Vogel from the Plant Functional Genomics Group to study the effects of  Brachypodium distachyon plant root exudates on the plant microbiome. This year, …
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