Search

Researchers at the JGI develop a tool to quickly and accurately identify mobile … seek to replicate themselves and spread from cell to cell. Two of the most common forms of MGEs are viruses and … than 15 million viral genomes. It was also key to developing the first version of the  IMG Plasmid Resource (IMG/PR) …

This series is the story of a giant metagenome assembly from Wisconsin’s Lake Mendota. In this episode: a look at the supercomputing that stitches together large datasets with the assembler program MetaHipMer2. Oak Ridge National … Perlmutter that works at large scale. But nearby the JGI, a cluster called Dori is also capable of running …

Populations of Antarctic lake microbial communities change with the seasons. The Science Light-harvesting bacteria … Ace Lake were collected over a 10-year period and sent to JGI for metagenomic sequencing. A study  recently published … the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at …

… cycles remains unexplored and uncultivated. Developing a more targeted genomic approach would allow … overcome this hurdle, a team led by Bernhard Fuchs and his postdoctoral researcher Anissa Grieb at the MPI for Marine … the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at …

… compounds shared by most living creatures for energy, growth and reproduction—most organisms produce a set of … The U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at Berkeley Laboratory, built off past experience in developing a secondary metabolites portal within the Integrated …

… mix-and-match characteristics — creating many different ways of processing nitrogen. To boost crops more efficiently … the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at … for computational analysis of the AT enzyme family, the JGI provided DNA synthesis capabilities to enable functional …

A preview of how large-scale single cell genomics complements … the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at … Research Council of Canada (NSERC) Discovery Grant to PFD (2019-06265). This work was also sponsored by NSF grants …

… and identified from environmental samples (metagenomes). However, the quality and completeness of metagenome-assembled … uncultivated viruses. Following up on those guidelines, JGI researchers have now developed CheckV (pronounced … the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at …

New evidence shows anaerobic fungi can degrade the hardiest of … Research Center. O’Malley is also affiliated with JBEI. The JGI data portals and pipelines helped identify potential genes responsible for lignin deconstruction. (The JGI also conducted RNA sequencing and alignment to the …

Most organisms use oxygen to convert food into energy. However, in environments with little or no oxygen, life had … the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at … of more than 400 cultured rumen prokaryotes from the  Hungate1000 project . They also used the tool to predict …

… that protects it against infections — using surprisingly few enzymes. The Science Maize ( Zea mays ) produces a … as  Sorghum bicolor — a  candidate bioenergy feedstock and  JGI Flagship Plant — could produce at least 15 zealexins. … the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility, through its  …

… a superorganism: one being that is actually comprised of two (or more) participants. One is a fungus (usually … the US Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility. Grigoriev and his team at the JGI contributed to annotation of the genomes, available …