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Complete genome sequence of the thermophilic, hydrogen-oxidizing Bacillus tusciae type strain (T2T) and reclassification in the new genus, Kyrpidia gen. nov. as Kyrpidia tusciae comb. nov. and emendation of the family Alicyclobacillaceae da Costa and
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Cataloging the Microbes that Manage the Health of River Systems
… Database provides details on river microbes in 90% of US … systems, these communities remain understudied. Through the JGI’s Community Science Program, Colorado State University … program at Pacific Northwest National Laboratory. The JGI sequenced over 1,000 metagenomes and established …
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Eelgrass Proves to Be Much Younger Than We Thought
… able to spread quickly and establish itself in a variety of new environments.  This all started roughly 250,000 years … event, doubling all of its chromosomes.  Over time, the new and old chromosome copies begin to diverge and mutate … by a fellowship to M.K. in the Helmholtz School for Marine Data Science (grant number HIDSS-0005) and by a grant to J. …
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FICUS Webinar: “Shining a Light: Advanced Photon Source Capabilities for FICUS Research”
… National Laboratory when applying to the FY2024 EMSL-JGI FICUS collaborative proposal call . Letters of Intent … power of genomics and molecular characterization from the JGI and EMSL in one proposed research project. In the same … changes after harvest treatment. Facility Contacts: JGI : For general questions, contact  Christa Pennacchio , …
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Enlarging Windows into Understanding Gene Functions
… JGI innovates protocol revealing how genetic variations in … (cDNA), reducing the amount of time it takes to produce a dataset from months to days and halving the total reagent … factors have been repurposed during evolution to control new functions,” O’Malley said. “Combining the two approaches …
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Engagement Webinar: How to Successfully Apply for a CSP Proposal
… On September 1, JGI held a JGI Engagement: Pro Tips for Successful Community … inviting researchers to submit white papers to the CSP  New Investigator call for proposals.  Tips: Contact us with … to make sure the goals, experimental design, and plan for data utilization are clear. Contact JGI staff for feedback …
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DAP-seq Drives Robust Mapping of Gene Regulation
… samples in a single experiment — and integrated these data with single-cell gene expression maps. Together, the … Implementation Lead at the DOE Joint Genome Institute (JGI), a DOE Office of Science User Facility located at … sequences are moving around, disappearing and appearing in new places.” With new insights available, the power grid of …
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A Grass Model to Help Improve Giant Miscanthus
… of rapidly growing plants whose biomass can be renewably converted into energy or biofuels. Although a member … Biosciences Institute, the DOE Joint Genome Institute (JGI), a DOE Office of Science User Facility located at … Miscanthus is dormant during the winter and grows anew the following spring without requiring replanting. …
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Accelerating Metagenomics Discoveries with Deep Learning
… an online workshop to harness deep learning for metagenomic data.  Metagenomic data, or DNA sequencing data gathered … the US Department of Energy (DOE) Joint Genome Institute (JGI), presented on generating vector representations of … chromosomal sequences in mixed-genome samples) with a new tool called MetaGNN (Prashant Pandey of CRD). The …
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Getting to the Bottom of Fungal Functions Across Earth’s Forests
… Across four forests, researchers have leveraged data from the 1000 Fungal Genomes project to form new connections between fungal guilds, genes and function. … The U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at …
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The Expanding Universe of Methane Metabolisms in Archaea
… Metagenome-assembled archaeal genomes provide new insights into an ancient metabolism. Methane is a … the Integrated Microbial Genomes & Microbiomes (IMG/M) database maintained by the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility, for publicly …
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Improving the Cacao Genome and Phytozome
… by a Mars, Inc.-led consortium through the Cacao Genome Database project. The genome sequence was assembled by the … for comparative purposes on the latest version of the JGI plant portal Phytozome at  phytozome-next.JGI.doe.gov . One of the goals in updating the genome …
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