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Who We Are
…   The U.S. Department of Energy (DOE) Joint Genome Institute (JGI) is a national user facility … of 225 researchers and support staff in the Integrative Genomics Building in Berkeley, California.  Our location at … organizations such as the DOE Systems Biology Knowledgebase and the National Microbiome Data Collective.    …
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RECAP: Multi-Omic Journeys with 2023 JGI Annual Meeting Keynotes
… From August 21-23, 2023, attendees joined the JGI Annual Genomics of Energy & Environment Meeting.  A wide array of … DNA sequencing, synthesis, metabolomics, data analysis, and new technology developments – has advanced their work on the … The U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility …
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How Filamentous Fungi Sense Food
… Tracing gene regulatory networks in the model fungus  Neurospora … Community Science Program through a proposal akin to the Encyclopedia of DNA Elements (ENCODE) project, which is … metabolized in filamentous fungi. The work also suggests a new approach to gene annotation, which then can be explored …
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Frederik Schulz
… Dr. Frederik Schulz joined the DOE Joint Genome Institute in 2016 and is leading the New Lineages of Life Group. His research is focussed on the … sequence data. Dr. Schulz employs multi-omics (metagenomics, metatranscriptomics, single cell genomics and … University of Vienna (Austria) PhD Microbial Ecology and Bioinformatics, University of Vienna (Austria) …
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A Model System for Perennial Grasses
… Panicum hallii genomes offer insights to drought tolerance. The Science Researchers have developed a genomic model to study drought tolerance in perennial … The work conducted by the US Department of Energy Joint Genome Institute, a DOE Office of Science User Facility, …
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A Better Way to Find RNA Virus Needles in the Proverbial Database Haystacks
… Team develops a computational pipeline to sift and characterize RNA virus sequences.  A zoo … Finding the RNA virus snowflakes in the snowstorm of genomic data involved developing special computational … higher-level classifications of virus groups (phyla.) The new sequences are filling in some gaps on existing virus …
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Toward More Reproducible, Reusable Stable Isotope Probing Experiments
… with the prospect of meta-analyses boosted by AI and Machine Learning — JGI researchers and collaborators work to … Generating these datasets opens up the possibility of new insights across ecosystems and research teams. Even … User Engagement Lead for the DOE Systems Biology Knowledgebase (KBase), as well as researchers from Pacific …
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Sphingomonas palmae sp. nov. and Sphingomonas gellani sp. nov., endophytically associated phyllosphere bacteria isolated from economically important crop plants
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Hiroshi Otani
… Since joining the DOE Joint Genome Institute in 2016, Dr. … research activity is focused on developing and implementing new technologies and methodologies that facilitate discovery of new secondary metabolites. Prior to joining the JGI, he … BS, Engineering, Tokyo Institute of Technology Master's, …
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Comparative single-cell genomics reveals potential ecological niches for the freshwater acI Actinobacteria lineage
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Bacterial Genome Annotation
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Nikos Kyrpides
… Dr. Kyrpides joined the DOE Joint Genome Institute in 2004 to lead the Genome Biology Program and the development of the comparative analysis platforms for microbial genomes and metagenomes (IMG). He became the Metagenomics Program head in 2010 and has the combined Microbial …
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