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Metagenome Sequence Analysis of Filamentous Microbial Communities Obtained from Geochemically Distinct Geothermal Channels Reveals Specialization of Three Aquificales Lineages
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Matthew Kellom
… Matt is broadly interested in the interactions between microbial life and environment, and using metagenomics to study these complex natural systems. Microbial communities living in hard-to-reach places that …
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Natural Prodcast Episode 24: Jackie Winter and SMC
… Metabolism Collaboratory data portal I’ve been working on with my colleagues Drew Doering and Bryce Foster and too … are familiar with JGI’s IMG data portal , the Integrated Microbial Genomics, there was a subsection of that called … and they used that on all of IMG’s genomes. But IMG is microbial genomes — mostly bacteria and archaea. And we knew …
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Webinar: MycoCosm Tutorial
… A(nswer): Our focus is on fungi, algae, plants, and the microbial world but we also annotated several Phytophthora … on the scientific questions asked and whether they are within DOE mission areas of bioenergy, carbon cycling, and … resources for plants (phytozome), algae (PhycoCosm), and microbial world (IMG) 29.  Q: Does MycoCosm support diploid …
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MGM Workshop at Fisabio Summer School
… June 24-28: Module 2/Microbial Genomics & Metagenomics Workshop The workshop is …
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Nigel Mouncey
… biology. Dr. Mouncey has a long-standing interest in microbial genetics that started with his education and carried forward into his roles as a … 33 pending. Includes: Enhancing spinosyn production with oxygen binding proteins. (2014) U.S. Patent Application … 2022. Expanding the Genomic Encyclopedia of Actinobacteria with 824 Isolate Reference Genomes. Cell Genomics 2: 100213 …
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A Sorghum Pangenome Opens More Doors to Discovery
… harness the traits that let this biomass powerhouse thrive. Within its genome, Sorghum bicolor holds keys to drought and … JGI Plant Program. Lovell was a senior author on this work with Nadia Shakoor, a research scientist at Donald Danforth … is the result of an international collaboration, beginning with the work of the late Todd Mockler, a researcher at …
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Webinar: SIP technologies at EMSL and JGI
… EMSL such as DNA-SIP, Protein SIP, Flux Balance analysis with metabolites, Isotope Ratio Mass Spectrometry, NanoSIMS, … so you’d need at least 2 micrograms in the sample to start with. 2. Q: What would a typical turnaround time be for data … don’t have a great way to resolve root respiration from microbial processes, but we’re not mixing the tracer with …
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JGI User Executive Committee Expands
… and Kevin Solomon of the University of Delaware. Along with the existing UEC members, their areas of study span the … her institution and Bioenergy Research Centers. Sogin is a microbial ecologist at UC Merced, where her group focuses on … at the University of Delaware. His lab is interested in how microbial communities can efficiently degrade complex …
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When “The Blob” Made It Hotter Under the Water
… event may foreshadow climate change impact on marine microbial communities. The Science A team of researchers … Blob.” The event was recorded during a long-term study of microbial communities in the northeastern subarctic Pacific … carbon from the atmosphere and keeps it in the deep ocean. With genomic samples collected before, during and after The …
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Simon Roux
… approaches to link viruses to their host(s), collaboration with JGI users for analyzing viral datasets, and the … knowledge of viral diversity and virus-host interactions in microbial systems. Through a 2021 DOE Early Career Research … and evolutionary drivers of virus-host dynamics in soil microbial communities. …
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Susannah Tringe Named 2020 DOE Lawrence Award Recipient
… was recognized for “advances in sequence-based studies of microbial assemblies, revealing the roles of microbial communities in carbon cycling, in interactions with plants, and as drivers of methane production, nutrient …
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