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A Collaboration to Improve Plant Genome Annotations Across Species
… works in partnership with the HudsonAlpha Institute for Biotechnology, which specializes in genome improvement for plants. As part of that partnership, the JGI and … about the project. The story is reposted here in modified format; their conversation has been lightly edited and …
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How Filamentous Fungi Sense Food
Science A team led by researchers at the University of California, Berkeley used a multi-omics approach to reconstruct … hemicellulose. The Impact N. crassa is the model organism for filamentous fungi, all of which contain a wide array of … components present in plant biomass. This is of interest for bioenergy researchers looking to improve the industrial …
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Extracting the Secrets of Secondary Metabolites
… secondary metabolites, those molecules not essential for growth yet essential for survival, may now be easier to characterize following a … Interspaced Short Palindromic Repeats) is the leading tool for accurately editing genomes, its effectiveness has …
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JGI@25: Strengthening Soybean
… we have revisited a number of notable achievements that showcase our collaborations and capabilities to enable great … ( Glycine max ) also has the advantage of reducing the need for nitrogen fertilizer. These impressive environmental and … up with him recently. “So, there’s going to be a need for these biofuels and that’s a good niche market for …
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Cataloging the Microbes that Manage the Health of River Systems
States. They also provided multiple access points to the information. The team harnessed a community-science program to … available, river-focused microbial resource that provides information at multiple scales from genes to the community … scale models to manage river ecosystems. One application for the information is the development of river health …
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JGI@25 RECAP: 2022 Annual Meeting features historical perspectives on JGI’s 25 years
… at the JGI’s history, from its beginnings in the sequencing for the Human Genome Project out to the future of the … with Ari Patrinos. The Genomics Arms Race Ari Patrinos , Former Director of DOE’s Office of Biological and … the DOE and National Institute of Health that this effort would prove invaluable. By the mid-1990s, the …
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2021 JGI Proposal Call Brings New Investigators into Community Science Program
… 80 full proposals, resulting from 95 letters of intent. For the first time, 63 percent of the accepted proposals … (KBase) , a free, open source data science platform that allows users to explore data and share … Research Institute (TSRI) launches a collaborative effort between JGI, TSRI and the University of Minnesota to …
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Engagement Webinar: How to Apply for Resources at Multiple DOE User Facilities
… a Single Proposal webinar, inviting researchers to apply for access to multiple genomics and molecular … more  here about the “Facilities Integrating Collaborations for User Science” (FICUS) program. Letters of Intent are due … 17, 2021. Q&A from the Webinar: Q(uestion): Who can apply for this proposal call? A(nswer): We work with people from …
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Green Algae Reveal One mRNA Encodes Many Proteins
… research team included scientists at the University of California (UC), Berkeley, UCLA, UC Davis, Brookhaven National … enabled by the “Facilities Integrating Collaborations for User Science” (FICUS) collaborative science initiative … address some of the most pressing challenges of our time. For more information, please visit  …
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Inspiring STEM Careers Through a Hands-on Everglades Microbiome Study
… provides the only known reference microbiome data sets for the Loxahatchee Refuge,  was published in the journal  Environmental Microbiome . “Before JGI was involved, I was not sure we could even complete … Boca Raton Community High School. “I can’t thank JGI enough for being willing to take a risk on a group of public high …
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JGI Earth Month: Kjiersten Fagnan Reflects on Shelter-in-Place Effects
… on April 25.  On March 17, 2020, a shelter-in-place order for all residents took effect in six San Francisco Bay Area … statewide. In this brief captioned video, JGI Chief Informatics Officer Kjiersten Fagnan reflects on the personal … address some of the most pressing challenges of our time. For more information, please visit  …
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Accelerating Metagenomics Discoveries with Deep Learning
… participants in an online workshop to harness deep learning for metagenomic data.  Metagenomic data, or DNA sequencing … to assemble and interpret. The workshop aimed to showcase how researchers are utilizing deep learning to … to “learn” features. State of the art algorithms can perform astonishing degrees of feature recognition: for …
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