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JGI@25: The Human Genome Project, or the JGI’s Origin Story
… In honor of the JGI's 25th anniversary in 2022, we have revisited a number of … help solve energy and environmental challenges.   The Human Genome Project began in 1990 when the U.S. Department of … to human health. Three DOE national labs had people and resources focused on three human chromosomes: Lawrence …
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Bacteria and Fungi Divvy Up the Work in Forest Floor
… UniProt, exist, are not specific enough for a microbial community like that from a temperate coniferous forest floor … to identify proteins, the team compiled DNA sequences (metagenomes) and messenger RNA sequences (transcriptomes) from … The transcriptomes edit out these distractions. Combining genome and transcriptome information allowed the team to …
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User Support Analysis Group
… for diverse experiment types, with main focus areas being genome variation, transcriptomics and epigenomics. Our work …
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Alabama Agricultural & Mechanical University Internship Program
… 2024 was a year of firsts, including the flagship internship … Alabama Agricultural & Mechanical University and the Joint Genome Institute. AAMU students spent two months in …
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Understanding Wildfire Recovery, Starting in Soil
… to health, researchers have taken a look at microbial genomes across a spectrum of burned soils. By connecting … they reconstructed and examined over six hundred bacterial genomes — mainly actinobacteria, as well as proteobacteria, … interact; beyond bacteria, these samples harbored fungal genomes, including a novel Leotiomycetes species and …
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Workforce Development & Education Outreach
… internship partnership that started in the summer of 2014. … program, a similar collaboration with AAMU was launched in 2024.  … Partners to host students transitioning from high school to community college. …
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A Plant Root Atlas for Tracking Developmental Trajectories
… published in the journal  Developmental Cell and provides a community resource that could help researchers track cell … scientist at the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User … research by then-Biosciences scientist Diane Dickel in 2017. In 2019, plant single-cell methods were officially …
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How Filamentous Fungi Sense Food
… researchers at the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User … (Berkeley Lab). The work was enabled in part through JGI’s Community Science Program through a proposal akin to the … enriching the work being done as part of the 1000 Fungal Genomes Project. Funding for the project was also provided …
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Long-term excess nitrogen fertilizer increases sensitivity of soil microbial community to seasonal change revealed by ecological network and metagenome analyses
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High functional diversity among Nitrospira populations that dominate rotating biological contactor microbial communities in a municipal wastewater treatment plant
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Metagenomic and Metatranscriptomic Analyses Reveal the Structure and Dynamics of a Dechlorinating Community Containing Dehalococcoides mccartyi and Corrinoid-Providing Microorganisms under Cobalamin-Limited Conditions
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Micro-Scale Applications Group
… technology in order to enhance the quality of single-cell genomes and directly link functional information with … DNA amplification, and sequence analysis to recover the genomes of uncultivated microbes. We also apply labeling … To provide additional functional insights into microbial genomes, the JGI now uses laser microdissection to …
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