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Data Discovery Tool Helps Identify Microbial Roles within Metagenomes
… the tool to correlate protein annotations with ratios of DNA sequence fragments from the ecosystems. Selecting a … The work is of interest to the Department of Energy (DOE) Office of Science’s Biological and Environmental … mSystems paper , a team at the DOE Joint Genome Institute (JGI), a DOE Office of Science User Facility located at …
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Improving the Cacao Genome and Phytozome
… infections. That’s why Mars, Inc., a maker of chocolate for more than 100 years and one of the world’s largest … for comparative purposes on the latest version of the JGI plant portal Phytozome at  phytozome-next.JGI.doe.gov . One of the goals in updating the genome annotation …
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Hybrid error correction and de novo assembly of single-molecule sequencing reads
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Fishing for Novel Cellulose Degraders
… led by Tanja Woyke at the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at … cellulases from their captured genomes, the team then used DNA synthesis and cloning, followed by protein in vitro … by the U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility, is supported under …
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Genome sequencing of four Aureobasidium pullulans varieties: biotechnological potential, stress tolerance, and description of new species
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JGI-USCCN Strain Sequencing Opportunity
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Innovative Technology Improves Our Understanding of Bacterial Cell Signaling
… cyclic di-GMP in bacteria through work enabled by the JGI’s Community Science Program (CSP) . The Impact Cyclic … of California, Berkeley and the Joint Genome Institute, a DOE Office of Science User Facility, built a … These 92 homologues were synthesized as codon optimized sequences and cloned into the Nano-lantern scaffold. Because …
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A Complex Confection Decoded: Sugarcane Reference Genome
… world’s most harvested crop by tonnage, sugarcane accounts for 80% of global sugar production. A reference genome for … The Impact In providing a reference sugarcane  genome , the JGI provides foundational genetic information that crop … Development (CIRAD), and the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science …
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JGI-KBase Panel at SACNAS
… Nov. 2: Getting Credit for Scientific Contributions of Any Size What is considered … establishing a professional presence through getting credit for any scientific contribution they make, whether as part … get credit for their contributions to science. A panel of DOE researchers, program managers, and intern alumni will …
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Dan Rokhsar
… Dr. Rokhsar joined the JGI in 2000 as the founding Associate Director for Computational Genomics, and led the computational … over fifty plant and animal genomes. He currently leads the JGI’s Computational Genomics group, and is past lead of the …
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A Plant Root Atlas for Tracking Developmental Trajectories
… nearly 100,000 single root cells and combining the information with previously published datasets. The work was  … , a research scientist at the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at … The U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility  located at Lawrence …
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Single-cell RNA sequencing reveals intrinsic and extrinsic regulatory heterogeneity in yeast responding to stress
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