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Supercharging SIP in the Fungal Hyphosphere
… and the U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility at Lawrence Berkeley National Laboratory, have … HT-SIP is a capability available to request through  the JGI proposal calls . … Laboratory was conducted under the auspices of the U.S. DOE under Contract DE-AC52-07NA27344. The work conducted by …
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From Sample Shipments to Sequences – A Tour of the JGI’s Sequencing Pipeline
… Every year, the JGI sequences around 35,000 samples — from plants, algae, … the sequencing lab. So today, Chris Daum walks through the JGI’s sequencing pipeline, where there are freezers with …
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When “The Blob” Made It Hotter Under the Water
… samples were sequenced by the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at Lawrence Berkeley National … Oceanographic Research (SCOR), the US Department of Energy (DOE) Joint Genome Institute, an Office of Science User …
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Rex Malmstrom
… of the Microscale Applications group. Before joining the JGI in 2010, he made the first ever measurements of in situ … to culture these microbes in the lab. After joining the JGI, he formed the Microscale Applications group to operate … a similar single-cell genomics pipeline that provides JGI users access to the genomes of uncultured microbes.  His …
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Counting dots or counting reads? Complementary approaches to estimate virus-to-microbe ratios
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JGI-KBase Panel at SACNAS
… through the Department of Energy-funded National Labs, User Facilities and Programs, and introduce best practices … get credit for their contributions to science. A panel of DOE researchers, program managers, and intern alumni will …
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Engagement Webinar: Utilizing long-read sequencing for metagenomics and DNA modification detection
… This webinar focused on how the JGI employs single-molecule, long-read DNA sequences to aid … as input. Data analysis Q:  What types of analysis support does JGI provide for DNA modification detection? A:  DNA … of DNA modifications are being detected currently. Q:  Does JGI support hybrid long-read / short-read metagenome …
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Building Wet and Dry Lab Skills
… year of Alabama A&M University students coming to the DOE Joint Genome Institute for research and training … project - they also worked with Sharon Greenblum from the User Support Analysis team to analyze plant microbiome data … on to Dori – a computer cluster owned and operated by the JGI and Berkeley Lab – to launch a jupyter notebook running …
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Improved-high-quality draft genome sequence of Rhodococcus sp. JG-3, a eurypsychrophilic Actinobacteria from Antarctic Dry Valley permafrost
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Hiroshi Otani
… Since joining the DOE Joint Genome Institute in 2016, Dr. Otani has been … of new secondary metabolites. Prior to joining the JGI, he studied transcriptional regulation, metabolism and … Kunakom S, Otani H, Udwary DW, Doering DT, Mouncey NJ. Cytochromes P450 involved in …
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Streamlining Regulon Identification in Bacteria
… coelicolor . The Impact As an integrative genome science user facility, connecting genes to functions is part of the mission of the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at …
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How Maize Makes An Antibiotic Cocktail
… as  Sorghum bicolor — a  candidate bioenergy feedstock and  JGI Flagship Plant — could produce at least 15 zealexins. … genes were synthesized by the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility, through its  Community Science Program . And …
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