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JGI Contributes Eight to 2023 Highly Cited Researchers list
… publication year are: Igor Grigoriev (Cross-field) Natalia Ivanova (Biology and Biochemistry) Nikos Kyrpides (Biology … Nikos Kyrpides, Natalia Ivanova and Simon Roux, along with data from a consortium that included Susannah Tringe and … and Roux also worked together on the development of a new software tool called geNomad that identifies and …
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JGI@25: Stories from Intern Alumni
… 2022 marks the JGI’s 25th anniversary . Over the next few months, we’ll be revisiting a number of notable … solve energy and environmental challenges. Over the past 25 years, the JGI has hosted interns from a number of …
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JGI Hosts GPU Hackathon in May
WHEN: May 6-10, 2019 WHERE: JGI With DOE investments in graphical … is one of the largest producers of environmental genomics data and has a strong reputation in the community,” said JGI … assistance from mentors and a team to port their code to a new architecture. Proposals are due March 1, 2019 for the …
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Directed Evolution of Flavin-Dependent Halogenases for Site- and Atroposelective Halogenation of 3‑Aryl-4(3H)‑Quinazolinones via Kinetic or Dynamic Kinetic Resolution
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High-quality permanent draft genome sequence of Bradyrhizobium sp. Th.b2, a microsymbiont of Amphicarpaea bracteata collected in Johnson City, New York
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New Microviridae isolated from Sulfitobacter reveals two cosmopolitan subfamilies of single-stranded DNA phages infecting marine and terrestrial Alphaproteobacteria
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Engagement Webinar: Harnessing JGI’s Metabolomics Capabilities
… long does it take to do all the analyses? A:  For the JGI  New Investigator and  Functional Genomics proposal calls, … it makes its sequencing, synthesis, metabolomics and data analyses capabilities available on a peer-reviewed … . ACS Chem Biol. 2019 Apr 19;14(4):704-714. doi: 10.1021/acschembio.8b01107. Epub 2019 Apr 4. Q:  Any advice …
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JGI@25: Tracking & Subduing the Plague of California’s Oak Woodlands
… plagued patches have become kindling for the inevitable next firestorm. The majestic sentinel oaks of the Golden … large-scale “citizen science” project to generate real-time data for modeling and predicting the spread of a plant … 1;313(5791):1261-6. doi: 10.1126/science.1128796 Science News of the Day: Stokstad E. Genetics. Genomes highlight …
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Understanding Wildfire Recovery, Starting in Soil
… — mainly actinobacteria, as well as proteobacteria, bacteroidata, and patescibacteria. A major strength of this kind of … from Colorado State University, the US Forest Service, New Mexico State University, the Environmental Molecular … and Coniochaeata lignaria on MycoCosm Data portal … Datasets …
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JGI@25: Cow Rumen and the Early Days of Metagenomics
… to more sustainable energy production.  However, less than 10% of the microbes found in any environment can be grown in … that can’t be cultured by analyzing and then extrapolating data obtained from environmental samples — to identify over … actually tested in the 2011 paper. In 2015, the study’s dataset became material for a hands-on undergraduate …
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Rex Malmstrom
Microscale Applications group. Before joining the JGI in 2010, he made the first ever measurements of in situ growth … molecular protocols.  Finally, his team utilizes new technologies, e.g. acoustic liquid transfer and … of the arbuscular mycorrhizal symbiosis. Nature Plants 10, 673–688 Vyshenska et al. 2023. A standardized …
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Three Join the JGI User Executive Committee
JGI User Executive Committee (UEC) recently welcomed three new members earlier this month – Sneha Couvilion of Pacific … Society of America and is also a National Microbiome Data Collaborative (NMDC) Champion. As an early career … active user of the JGI at any time in the past two fiscal years is eligible for election to the UEC. Members serve …
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