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Genome sequencing of four Aureobasidium pullulans varieties: biotechnological potential, stress tolerance, and description of new species
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Russulaceae: a new genomic dataset to study ecosystem function and evolutionary diversification of ectomycorrhizal fungi with their tree associates
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Novel Hydrophobins from Trichoderma Define a New Hydrophobin Subclass: Protein Properties, Evolution, Regulation and Processing
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DNA affinity purification sequencing and transcriptional profiling reveal new aspects of nitrogen regulation in a filamentous fungus
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Comparative analysis of chicken chromosome 28 provides new clues to the evolutionary fragility of gene-rich vertebrate regions
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Rapid selective sweep of pre-existing polymorphisms and slow fixation of new mutations in experimental evolution of Desulfovibrio vulgaris
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Diversity of Sordariales Fungi: Identification of Seven New Species of Naviculisporaceae Through Morphological Analyses and Genome Sequencing
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First Monoploid Reference Sequence of Sugarcane
… genome . The Science Most species are diploids and have two sets of chromosomes, one from each parent. In contrast, many crops have multiple sets of chromosomes (they are “polyploid”) and their complex … modern sugarcane cultivars are hybrids, each with more than 100 chromosomes; assembling a sugarcane genome is incredibly …
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JGI@25: Expanding Metagenomics to Capture Viral Diversity
… it, viruses are most likely in your system and in your data, and they’re probably influencing the microbes there,” … 2016, Nikos Kyrpides at the JGI led a team that combed datasets from around the world, finding over 125,000 partial and … tool, CheckV, assesses viral genomes, and grades their quality based on completeness. Along with expanding the …
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From Intern to Published Scientist: The Journey of a JGI-UC Merced Intern
… ecosystem,” said Salamov, one of Wint’s mentors and a data scientist at the JGI. Previous studies were conducted … about how to navigate and analyze large genomic datasets during the internship, Wint also began learning about … Evolution . Mol Biol Evol. 2022 Feb 3;39(2):msab372.doi: 10.1093/molbev/msab372.   Byline: Ashleigh Papp …
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Shattering Expectations: Novel Seed Dispersal Gene Found in Green Millet
… for nearly 600 green millet plants and released a very high quality reference S. viridis genome sequence. Analysis of … it was involved in shattering by turning it off. “It’s a new shattering gene variant identified in a natural … be specific to species or groups of species.  The genome data also revealed that green millet was introduced into the …
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iPHoP: A Matchmaker for Phages and their Hosts
… used 1,870 known virus-host pairs to generate a matrix of data points.  Applied to 216,015 high-quality virus sequences in the IMG/VR database, the iPHoP … reflecting factors such as the quality and number of datasets for human microbiome data. In other environments, such …
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