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Engagement Webinar: Utilizing long-read sequencing for metagenomics and DNA modification detection
… for “regular” vs the ultra-low input library creation protocols for PacBio? A(nswer):  Regular PacBio typically … deeply are metagenomes sequenced? A:  For the next call ( CSP New Investigator ), up to 4 long-reads (PacBio) … the standard analysis pipeline but can be done on request by the PI. We currently use the ‘Base Modification Analysis’ …
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Behind the Paper: Hot Springs Metagenomics
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Complete Genome Sequence of Agrobacterium sp. Strain 33MFTa1.1, Isolated from Thlaspi arvense Roots
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Tanja Woyke
… Highly Cited Researcher, Biology and Biochemistry, top 1%, by Clarivate Analytics 2020 van Niel International Prize for Studies in Bacterial … Nature Methods, Nature Communications, Nature Protocols, Nature Reviews Genetics, ISME J, Nucleic Acids … Nature Biotechnology 39, 499-509. Schulz et al. 2020. Giant virus diversity and host interactions through …
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Micro-Scale Applications Group
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The F-Box Gene Family Is Expanded in Herbaceous Annual Plants Relative to Woody Perennial Plants  
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Ian Blaby
… Since 2019 Dr. Blaby heads the Biodesign Platform at the Joint Genome … Ian Blaby on Google Scholar Grosjean et al ., A hemoprotein with a zinc-mirror heme site ties heme availability … coupling Cre-lox and CRISPR-Cas9 systems. PloS one. 15: 11. 2020 Blaby & Cheng, Building a custom high-throughput …
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Sequencing Technologies & Products
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Draft Genome Sequence of Frankia sp. Strain QA3, a Nitrogen-Fixing Actinobacterium Isolated from the Root Nodule of Alnus nitida
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Uncovering Novel Genomes from Earth’s Microbiomes
… expanding the known diversity of bacteria and archaea by 44%, is now available and  described November 9, 2020 in  Nature Biotechnology . Known as the GEM (Genomes … on metabolic modeling .) KBase User Engagement lead Elisha Wood-Charlson added that by demonstrating the ease with …
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JGI@25: The Little Alga That Could
… 7,000 genes with other organisms (a third of those shared by both humans and flowering plants). Its genome also … the journal Science . At the time, the project was co-led by Daniel Rokhsar, head of the JGI’s Computational Biology … within Chlamy, meaning that its RNA can produce up to four proteins, which has far-reaching implications. “This is …
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Making a Lichen Together
… to the ascomycetes, one of the two main branches of fungi); another is a photosynthetic microbe, tucked in the … are able to partner to form lichens. Studying the symbiosis by investigating a lichen’s genomes and transcriptomes could … Summary To shed light on lichen, an international team led by Daniele Armaleo, a biologist at Duke University, …
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