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FICUS-NERSC/KBASE

… basis, in accordance with JGI’s data release policy. Interactions with applicants and others who might be …

Association mapping, transcriptomics, and transient expression identify candidate genes mediating plant–pathogen interactions in a tree

RegTransBase – a database of regulatory sequences and interactions based on literature: a resource for investigating transcriptional regulation in prokaryotes

Desert truffle genomes reveal their reproductive modes and new insights into plant–fungal interaction and ectendomycorrhizal lifestyle

Coupled laboratory and field investigations resolve microbial interactions that underpin persistence in hydraulically fractured shales

Gallionellaceae in rice root plaque: metabolic roles in iron oxidation, nutrient cycling, and plant interactions.

Extracting Protein-Protein Interactions (PPIs) from Biomedical Literature using Attention-based Relational Context Information

Genome-wide fitness profiling reveals molecular mechanisms that bacteria use to interact with Trichoderma atroviride exometabolites

BiG-SCAPE 2.0 and BiG-SLiCE 2.0: scalable, accurate and interactive sequence clustering of metabolic gene clusters

Better Genome Editing for Bioenergy

… their tool before felling their research problem: at a genetic level, how does Y. lipolytica work? The project was … This work was supported by DOE Joint Genome Institute grant CSP-503076 (IW, HA, and MB) and NSF 1706545 (IW). HA and JW …

Mining Metagenomes for Cas Proteins

… mining the datasets in the Integrated Microbial Genomes and Microbiomes (IMG/M) suite of tools managed by the U.S. … editing is being advanced as a potential therapy for both genetic and complex disease. Finally, gene editing is being … JGI data scientist David Paez-Espino in Nikos Kyrpides’ Microbiome Data Science group mined the IMG/M system with …

MGM Workshop at Fisabio Summer School 2026

… research results in genomics, metagenomics and the human microbiome. The workshop will train participants in … training in the use of the Integrated Microbial Genomes & Microbiomes (IMG/M) system, presented by Rekha Seshadri and Mateus Fiamenghi from the Microbiome Data Science group. …

Lawrence Berkeley National Laboratory is a U.S. DOE Office of Science
national laboratory managed by the University of California.