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Toward More Efficient Artificial Photosynthesis
… was enabled in part through the Community Science Program (CSP) of the U.S. Department of Energy (DOE) Joint Genome … (Berkeley Lab). Supporting the Erb lab through the CSP Functional Genomics call, the JGI synthesized library of … compounds through a light-driven process. The JGI’s  CSP Functional Genomics call is open year-round, and reviews …
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JGI@25: Cow Rumen and the Early Days of Metagenomics
… that are still vital to facilitate the assembly of small DNA fragments into larger and coherent pieces called contigs … switchgrass, researchers isolated and sequenced DNA from rumen microbes involved in the digestion process.  …
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Inspiring STEM Careers Through a Hands-on Everglades Microbiome Study
… ranging from wetlands to tree islands to cattails. In 2018, the US Department of Energy (DOE) Joint Genome … Beach County, and particularly about the microbes that play roles in the methane cycle. Their data report, which … JGI researchers walked students through the processes of DNA sequencing, metagenome assembly, and even an …
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JGI@25: Expanding Metagenomics to Capture Viral Diversity
… all over the world, including 3,908 isolate reference DNA viruses and 264,413 computationally identified viral … substances from the environment, viruses could play a role. “If you want to do anything with a microbiome — you …
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A Collaboration to Improve Plant Genome Annotations Across Species
… and PPRD could help with understanding gene functional roles, but the experimental inconsistency makes … keep updating the Gene Atlas with curated datasets from CSP projects and aim to improve plant gene function … a subscriber? Avinash: It has been publicly available since 2018. There were more than 15 citations even before this was …
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Sequencing Sphagnum Leads to Discovery of Sex Chromosomes
… chromosomes in the plant and illuminates the significant role sex plays in how the moss grows, stores carbon and … peatlands’ potential as carbon sinks and minimize their role as carbon sources. Summary Sphagnum, a genus of just … thriving and others struggling to survive. Given the vital role sphagnum plays in carbon sequestration, understanding …
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JGI User Executive Committee Expands
… he’s interested in finding ways to boost visibility of the CSP to encourage more plant proposals and provide feedback … functioning of ecosystems. She leads a recently approved CSP New Investigator proposal to understand the genetic … She is exploring the seagrass rhizosphere in her ongoing CSP New Investigator proposal. As an early career …
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Meeting Report: “Metagenomics, Metadata and Meta-analysis” (M3) Workshop at the Pacific Symposium on Biocomputing 2010
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The Surprising Structure of a Shrub Willow Sex Chromosome
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When “The Blob” Made It Hotter Under the Water
… colleagues collected more than 270 water samples. Genomic DNA extracted from the water samples were sequenced by the …
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Back to the Future! A Sorghum Story
… sorghum’s historical — and literal — roots could play a big role in our energy future. …
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Len Pennacchio
Data Generation Platforms (Sequencing, Single Cell, DNA Synthesis, and Metabolomics) as well as Research & …
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