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Mining Public Databases Yields Largest Map of Fungal Mitochondrial Genomes to Date
… JGI researchers nearly tripled the available fungal mitochondrial genome data, unlocking new potential for AI-driven … Impact This dataset gives researchers a new foundation for studying how fungi produce and manage energy at the cellular … First, they scanned over 26,000 publicly available metagenomes in the JGI's IMG portal for mitochondrial …
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Streamlining Regulon Identification in Bacteria
… RIViT-seq technology could speed up associating transcription factors with their target genes. The Science Regulons are a group of genes that can be turned on … given sigma factor are inferred. Prior to this most recent study, only 12 sigma factors and 200 genes (or 209 sigma …
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Mapping Heat Resistance in Yeasts
… A new approach for improving functional annotation in fungal genomes. The Science In a proof-of-concept study, researchers demonstrated that a new genetic mapping … The work conducted by the US Department of Energy Joint Genome Institute, a DOE Office of Science User Facility, is supported by the Office of Science …
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When “The Blob” Made It Hotter Under the Water
… marine heatwave event may foreshadow climate change impact on marine microbial communities. The Science A team of researchers tracked the impact of a … as “The Blob.” The event was recorded during a long-term study of microbial communities in the northeastern subarctic …
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Dealing with Drought: Uncovering Sorghum’s Secrets
… Over 40 percent of the cereal crop’s genes respond to drought stress. The Science Fields of drooping stalks and cracked earth are … a limiting factor – before or after flowering. For the study, the team grew two sorghum varieties: one that … D.C.-D., R.O., J.W.T., J.D., J.P.V., P.G.L., and E.P.); Gordon and Betty Moore Foundation Grant GBMF3834 and Alfred P. …
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Busting the Unbreakable Lignin
… shows anaerobic fungi can degrade the hardiest of plant components   The Science There are three main ingredients to tackle when it … order to do so is a resource-intensive process. Now, a new study shows how anaerobic fungi — the kind living in the … their funding sources: Office of Biological and Environmental Research of the U.S. Department of Energy grant …
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Exploring the loblolly pine (Pinus taeda L.) genome by BAC sequencing and Cot analysis
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Shotgun metagenome data of a defined mock community using Oxford Nanopore, PacBio and Illumina technologies
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Microbial life under ice: Metagenome diversity and in situ activity of Verrucomicrobia in seasonally ice‐covered Lakes
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Genus-Wide Assessment of Lignocellulose Utilization in the Extremely Thermophilic Genus Caldicellulosiruptor by Genomic, Pangenomic, and Metagenomic Analyses
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FOAM (Functional Ontology Assignments for Metagenomes): a Hidden Markov Model (HMM) database with environmental focus
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MaxBin: an automated binning method to recover individual genomes from metagenomes using an expectation-maximization algorithm
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