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Sequencing Sphagnum Leads to Discovery of Sex Chromosomes
… plants don’t fully decompose in peatlands, and so carbon within their tissues doesn’t return to the atmosphere. Peat … the U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility at Lawrence Berkeley … kingdom. Specifically, researchers found that female plants within a species tended to weather pH stress from peatlands’ …
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A Mentor’s Perspective on Training the Next Generation
Over the years, hundreds of interns have come to the JGI from all parts of the globe to gain lab experience and contribute to ongoing projects. In one way or another, they’ve all mentioned how invaluable their time at the JGI was and how great it was to have an experienced career …
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Accelerating Metagenomics Discoveries with Deep Learning
Lab) and other institutions shared their works-in-progress with 86 participants in an online workshop to harness deep … the US Department of Energy (DOE) Joint Genome Institute (JGI), presented on generating vector representations of … The U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility  located at Lawrence …
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Katherine Louie
Dr. Louie joined the JGI in 2014 to develop the metabolomics program, and in 2019 … manages metabolomics production for community sequencing projects and heads R&D efforts to expand the metabolomics … over 10k samples/year, Dr. Louie and her team work with other JGI scientists in development of new, advanced …
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Zhong Wang
… on developing new bioinformatics solutions to support JGI in adopting new genomics technologies, scaling up … scientists and biostatisticians. Through collaborations with internal and external scientists, the Wang group has … analyses and software to enable “grand-scale” scientific projects. These solutions include large-scale genome …
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Supercharging SIP in the Fungal Hyphosphere
… a commonly-used process for studying microbial communities, with results published in the  November 2022 issue … the U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility at Lawrence Berkeley … HT-SIP is a capability available to request through  the JGI proposal calls . … Work at Lawrence Livermore National …
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Rex Malmstrom
… of the Microscale Applications group. Before joining the JGI in 2010, he made the first ever measurements of in situ … in situ functional activities of specific microbial groups within complex communities.  The Microscale Applications … also carries out custom preparative work for difficult user projects, including those that require fluorescence …
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The Power of One, Amplified
… cells harbored mobile genetic elements that were missed within paired metagenome assembled genomes (MAGs), and that … the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at Lawrence Berkeley …
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A Grass Model to Help Improve Giant Miscanthus
Department of Energy (DOE) Bioenergy Research Center, along with researchers from the Energy Biosciences Institute, the DOE Joint Genome Institute (JGI), a DOE Office of Science User Facility located at Lawrence Berkeley …
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In Hot Spring Microbial Mat, Viruses Ride “Piggyback”
… inside the host’s genome, living quietly and replicating with their host indefinitely. Now, in studying a microbial … the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at Lawrence Berkeley …
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iPHoP: A Matchmaker for Phages and their Hosts
… these hosts are microbes like bacteria, not humans. With metagenomic sequencing, researchers have found more of … evaluates multiple predictions to reliably match viruses with their archaea and bacteria hosts. The Impact Within the … the U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility at Lawrence Berkeley …
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An Enzyme Family that Helped Shape Nitrogen Metabolism on Our Planet
National Laboratory (Berkeley Lab). He completed this work with collaborators at the University of Wisconsin-Madison as … the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at Berkeley Lab. In …
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