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How Filamentous Fungi Sense Food
… a job site for a task that requires a flathead screwdriver with a full toolbox including Phillips and specialty … to mention Allen wrenches. The fungi are similarly armed with a variety of PCWDEs to first break down the components … the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at …
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From Competition to Cooperation
… independently evolved to establish symbiotic relationships with plants (mycorrhizae), and particularly how fungi that … species include 29 newly-sequenced mycorrhizal genomes. With so many fungal  genomes , the team conducted a … the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at …
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Mining Public Databases Yields Largest Map of Fungal Mitochondrial Genomes to Date
… By leveraging new tools and large-scale data mining, JGI researchers nearly tripled the available fungal … found inside mitochondria, the energy-producing structures within cells. This is the largest dataset of its kind ever … than 6,000 mitochondrial sequences previously unrecognized within existing public databases and recovered more than …
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Exploring Possibilities: 2022 JGI-UC Merced Interns
… in science. Hear more about what they learned from working with their JGI mentors, what challenges they overcame, and what new … that I’ve been in my PhD program, I’ve been really focused with academia. And so this was the first time I was …
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PhycoCosm Tutorial
… analysis tools developed by the Joint Genome Institute (JGI), a US Department of Energy Office of Science user …
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Toward More Efficient Artificial Photosynthesis
… have developed a platform that mimics chloroplast function within a cell-sized system. The Impact Photosynthesis … the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at … fixing enzyme in nature. The library provided the Erb lab with enzymes that led to a previously reported synthetic …
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Secrets of the Needles: What Microbes do on Conifer Leaves
… the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at … land and the atmosphere. Microbes living there can interact with chemical defenses of plants and influence nutrient … composition varied across both sites and host tree species, with geographic site exerting the stronger influence. …
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“A STEM career is in reach and accessible”
… Interns from Antioch High School. Though a partnership with Biotech Partners, a nonprofit that provides underserved youth in the Bay Area with personal, academic and professional development … higher education and access to fulfilling science careers, JGI hosted five students from Antioch High School this …
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Refining the Process of Identifying Algae Biotechnology Candidates
… seems fairly simple: place these algae in a container with access to sunlight, water and carbon dioxide so they … recipes can be refined for best results, often by starting with identifying the right ingredients. Researchers … the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at …
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New and Improved: Eucalyptus Reference is Now Accessible
… July edition of the journal G3 Genes | Genomes | Genetics , with significant advances compared to the 2014 Eucalyptus … The new improved genome assembly generated through the JGI’s Community Science Program will help support targeted … in 2014 by a team led by University of Pretoria scientists with help from researchers at the DOE Joint Genome Institute …
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Frederik Schulz
… and biogeochemical cycles. He provides his expertise to the JGI user community and supports various user projects in the … A. et al. 2023. Identification of mobile genetic elements with geNomad. Nature Biotechnology . Schulz et al. 2022. …
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Building Wet and Dry Lab Skills
… undergraduate interns Tamyra Long and Zyiah Mikes worked with mentors Yi Zhai and John Vogel from the Plant … there was a new aspect to the project - they also worked with Sharon Greenblum from the User Support Analysis team to … on to Dori – a computer cluster owned and operated by the JGI and Berkeley Lab – to launch a jupyter notebook running …
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