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From Intern to Published Scientist: The Journey of a JGI-UC Merced Intern
… Rhondene Wint, an alumna of the DOE Joint Genome Institute (JGI)-UC Merced internship program and current PhD student, reached this milestone with a recent publication in Molecular Biology and Evolution … and it feels so rewarding,” Wint said. For Axel Visel, JGI Science Deputy and a co-founder of the internship program, …
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A Revamped Amplification Method that Enables Nearly Complete Single-Cell Genomes
… With a new methodology, scientists are now getting more … The U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at … studies, these scientists (now at Stanford University) collaborated with the JGI. Working together, they found most …
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Genome Sequences of Industrially Relevant Saccharomyces cerevisiae Strain M3707, Isolated from a Sample of Distillers Yeast and Four Haploid Derivatives
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Boosting Small Molecule Production in Super “Soup”
… strains. (Blake Rasor) Think of cells as tiny factories: within their walls they have both the machinery to make … the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at Lawrence Berkeley National … and environmental characterization and cleanup. The JGI provides integrated high-throughput sequencing and …
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Nikos Kyrpides
… Joint Genome Institute in 2004 to lead the Genome Biology Program and the development of the comparative analysis … Inc. in Chicago, IL. He did his postdoctoral studies with Carl Woese at the University of Illinois at … on Microbiome Research with an emphasis on Microbiome Data Science. His group is developing novel methods for enabling …
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An Automated Tool for Assessing Virus Data Quality
… uncultivated viruses. Following up on those guidelines, JGI researchers have now developed CheckV (pronounced … to recover the genomes of these viruses and associate them with their microbial hosts. However, assembling viral … the completeness of these sequences and complements a community effort to develop guidelines and best practices …
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Silver age of GOLD introduces new features
… The JGI’s Genomes OnLine Database celebrates 25 years as a vital … repository, making curated microbiome metadata that follows community standards freely available, and enabling … the appropriate contextual information, or metadata, stored with them. GOLD provides manually curated metadata resources …
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Getting to the Bottom of Fungal Functions Across Earth’s Forests
… — one thing is for sure: there are lots of fungi around. Within a forest’s soil, hundreds of species decompose … The U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at … Genomes that Paved the Way This project stems from a Community Science Program proposal that Martin submitted in …
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Peatland microbial community responses to plant functional group and drought are depth‐dependent
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Impacts of The Wetland Sedge Carex aquatilis on Microbial Community and Methane Metabolisms
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Long-read metagenomics of soil communities reveals phylum-specific secondary metabolite dynamics
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Microbial communities of the Laurentian Great Lakes reflect connectivity and local biogeochemistry
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