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Ben Bowen
… projects, Dr. Bowen’s work focuses on developing high-performance computing workflows and integrating mathematics and chemistry for advanced analysis, modeling, and data integration. Dr. Bowen’s expertise in spectral … Northen, T., & Bowen, B. (2017). OpenMSI Arrayed Analysis Toolkit: analyzing spatially defined samples using mass …
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JGI-KBase Panel at SACNAS
Nov. 2: Getting Credit for Scientific Contributions of Any Size What is considered … establishing a professional presence through getting credit for any scientific contribution they make, whether as part … to get credit for their scientific contributions through data citations, authorship, and presenter opportunities. …
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Doubling Down on Known Protein Families
… the collective power of more than 26,000 microbiome datasets, all accessible through the publicly available  … unique makeup of microbe players and the functions they perform, artificially replicating a whole community is … majority of these protein families belonged to bacteria and viruses, though 6 million of the sequences evaded …
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Engagement Webinar: How to Successfully Apply for a CSP Proposal
On September 1, JGI held a JGI Engagement: Pro Tips for Successful Community Science Program (CSP) Applications … to submit white papers to the CSP  New Investigator call for proposals.  Tips: Contact us with your questions … to make sure the goals, experimental design, and plan for data utilization are clear. Contact JGI staff for feedback …
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Engagement Webinar: What Can You Do With An Approved CSP Functional Genomics Call Proposal?
… the Community Science Program’s  Functional Genomics call for proposals .  On July 8, JGI’s DNA Synthesis Science … Genomics (formerly DNA Synthesis) call, and he noted the data had driven his lab’s focus on guide RNA library … will receive a FedEx package with the sequenced, quality controlled population representing the full library. …
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An Enzyme Family that Helped Shape Nitrogen Metabolism on Our Planet
… back story — they rely on enzymes that have been evolving for billions of years. However, these enzymes are often … organisms have developed metabolisms that function with a toolkit of enzymes. It’s useful to differentiate these enzyme tools into two groups: core metabolism and specialized …
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JGI@25: Strengthening Soybean
… ( Glycine max ) also has the advantage of reducing the need for nitrogen fertilizer. These impressive environmental and … genes involved in agronomic traits related to nutritional quality and disease resistance  due to the sequence’s … and that’s going really well. And having the sequence data available for us to enable that research will have a …
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Training the Next Generation of Talent
Olmstead was back on campus at the University of California, Merced to start orientation as a first-year graduate … genome research and apply experimental and computation tools to solve research problems. In Visel’s group, Olmstead … says. “Many academic labs don’t know how to analyze RNA-Seq data very well, sending it out to companies. I’ll take that …
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Disclaimer
NOTICE Information from this server resides on a computer system … the United States Government nor the University of California nor any of their employees, makes any warranty, … including the warranties of merchantability and fitness for a particular purpose, or assumes any legal liability or …
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Dispatches From JGI Interns
… describe their deep dives into genomics, computational tools, and big data.  …
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Fishing for Novel Cellulose Degraders
The Science One of the most vital pieces of equipment for fly fishing is a boxful of lures. Designed with feathers … cellulose-degrading microbes. The new technique is another tool for microbial ecologists to learn more about the … researchers also hooked and were able to reconstruct a high-quality draft co-assembled genome for a new genus level …
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Neha Varghese
Neha’s key role is to design, benchmark, and apply bioinformatics software to enable analysis and interpretation of genomic and metagenomic data for JGI’s user community. She also provides support for … through implementation of advanced analysis pipelines and tools as well as development and implementation of …
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