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Fungal Friends or Foes in Plant Roots
… plant host health. The Science Researchers compared the genomes of fungi that colonize Arabidopsis thaliana roots … colonize roots by degrading the plant cell wall component pectin. The results therefore predicted that these … of plant root microbiome and other microbiomes by providing reference genomes of the key community participants and …
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Biotech Partners Summer Intern Co-Authors NAR Paper
… Kaushal Sharma, one of five Antioch High School rising juniors who participated in internships at the DOE Joint Genome Institute this summer through the Biotech Partners … the version 6 data updates and feature enhancements to the Genomes OnLine Database (GOLD) administered by the DOE JGI. …
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Complete genome sequence of Geobacillus thermoglucosidasius C56-YS93, a novel biomass degrader isolated from obsidian hot spring in Yellowstone National Park
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Permanent draft genome sequence of Desulfurococcus mobilis type strain DSM 2161, a thermoacidophilic sulfur-reducing crenarchaeon isolated from acidic hot springs of Hveravellir, Iceland
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A Plant Root Atlas for Tracking Developmental Trajectories
… the roles played by neighboring cells in these processes.   One of the study’s co-authors is  Benjamin Cole , a research … scientist at the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User … in diverse plant species beyond models,” he said. Cole annotated cell types in the plant root atlas, and noted that …
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How to Target a Microbial Needle within a Community Haystack
… and then efficiently retrieve and characterize their genomes. The Impact Despite great strides in generating … (HCR-FISH). In contrast to standard FISH where a one probe adds one fluorescent molecule when bound to a target, HCR-FISH … The work conducted by the U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility, is …
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Nikos Kyrpides
… Dr. Kyrpides joined the DOE Joint Genome Institute in 2004 to lead the Genome Biology Program and the development of the comparative analysis platforms for microbial genomes and metagenomes (IMG). He became the Metagenomics … (2021) CheckV assesses the quality and completeness of metagenome-assembled viral genomes. Nature Biotechnol . …
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Behind the Paper: Hot Springs Metagenomics
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JGI on the 2021 Highly Cited Researchers List
… research team that combined field data with a reference switchgrass genome to associate climate adaptations with switchgrass … of webinars featuring aspects of the Integrated Microbial Genomes & Microbiomes (IMG/M) Nikos Kyrpides was part of an …
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JGI Advisory Committees Code of Conduct
… staff members of the US Department of Energy (DOE) Joint Genome Institute (JGI) commit to Lawrence Berkeley National … and debate; Make decisions based on merit of issues; Act honestly, transparently, and ethically; Act on behalf of the …
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Engagement Webinar: How to Successfully Apply for a CSP Proposal
… feasibility, and relevance to the DOE’s mission.  Have someone proofread your proposal to make sure the goals, … of proposing a truly exploratory small proposal that might not max out the whole 500 gigabases? Is it better to try to … the data and work with the data. Q: How would you include a reference or citation in a proposal? A: If you’re presenting …
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Minimum information about a single amplified genome (MISAG) and a metagenome-assembled genome (MIMAG) of bacteria and archaea
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