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Back in the Lab: the 2023 Summer Intern Experience
… internship experience in several years for students and researchers alike at the JGI. With the past few years upended by the pandemic, 2023 …
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A Natural Mechanism Can Turbocharge Viral Evolution
Understanding how a fundamental mechanism of evolution allows … this means using proteins on its tail fibers to latch onto a specific target on the microbial cell’s … Lawrence Berkeley National Laboratory (Berkeley Lab), has looked for DGRs in a broad range of publicly available …
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A Powerful Technique to Study Microbes, Now Easier
Lawrence Livermore National Lab biologist Jennifer Pett-Ridge collaborated with JGI scientists on an ambitious project: to bring in robots to help process …
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PhycoCosm Tutorial
… interactive collection of sequenced algal genomes, omics data and comparative analysis tools developed by the Joint Genome Institute (JGI), a US Department of Energy Office of Science user …
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Evolution of a Fungal Gene Expression Regulator
Describing the largest analysis to date of the modified DNA base 5mC variations in fungi. The … the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility, and others like …
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“A STEM career is in reach and accessible”
Notes from the Summer 2018 Biotech Partners Interns from Antioch High School. Though a partnership with Biotech Partners, a nonprofit that provides underserved youth in the Bay Area with personal, … higher education and access to fulfilling science careers, JGI hosted five students from Antioch High School this …
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iPHoP: A Matchmaker for Phages and their Hosts
…   To understand virus-host dynamics, computation helps fill in what cultivation can’t. The Science At first, viruses are merely toolkits. To …
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I-Min (Amy) Chen
… in Computer Science. Her research has been focused on semantic and object-oriented data modeling, and biological data management. She was one of … currently the Microbiome Computational Resource Lead at the JGI, responsible for the data management infrastructure of …
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Cracking the Secrets of the Diatom’s Shell
Biofuels and bioproducts are a way to kick our addiction to fossil … Mukhopadhyay and Steve Singer are harnessing the versatile bacterium Pseudomonas putida to break down biomass and … research at the Joint BioEnergy Institute (JBEI) , a JGI partner and one of the four US Department of Energy …
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How Filamentous Fungi Sense Food
Tracing gene regulatory networks in the model fungus  Neurospora crassa . The … Berkeley used a multi-omics approach to reconstruct and model gene regulatory pathways used by the filamentous … biomass. This is of interest for bioenergy researchers looking to improve the industrial production of sustainable …
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The Fungi That Survive In Antarctica
Black fungi are microscopic and mighty. They survive everywhere from Antarctica to Joshua Tree National Park, despite extremely harsh conditions. And their … are working with scientists from around the world – and the JGI – to understand them better. …
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2023 Progress Report
Vision  Lead genomic innovation for a sustainable bioeconomy. Mission  As a U.S. … of Energy Office of Science user facility, we provide advanced genomic capabilities, large-scale data, and professional expertise to support the global research …
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