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Tracing the Evolution of Shiitake Mushrooms
… highlight the diversity of white rot fungi in the genus Lentinula   The Science Shiitake mushrooms get their name from the same place they often … besides Europe and Antarctica. A  new analysis takes a  genomic look at Lentinula samples from around the world. By …
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Game On: High School Students Drive Everglades Metagenomics Study
… Management Group, attended a conference in Florida to discuss a JGI pilot project involving soil sampling in the … the next generation of scientists. She shares her thoughts about the experience below. In the summer of 2018, Jonathan … decided to do an environmental microbial community (metagenomic) soil study in an untouched region of the …
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MycoCosm Tutorial
… Learn more about MycoCosm, a data portal with over 2,000 fungal genomes … equipped with interactive web-based tools for comparative genomics and community annotation. Presented by Igor …
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Here, There and Everywhere: Large and Giant Viruses Abound Globally
… expands the global diversity of large and giant viruses. While the microbes in a single drop of water could … they are found everywhere, comparatively little is known about viruses, much less those considered large and giant. … co-cultivated with amoeba or with their hosts, though metagenomics is now making it possible to seek out and …
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Partners
… and is further leveraging the services of the Arizona Genomics Institute for DNA and RNA extractions to support … expand data functionality. Close partnerships with other user facilities enable the ability to leverage their … through the Facilities Integrating Collaborations for User Science (FICUS) program.     …
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Defining a Pan-Genome for Antarctic Archaea
… haloarchaea from different Antarctic lakes. To assess the genomic variation in haloarchaea, they also characterized … sequences from six hypersaline lakes, researchers focused on understanding the genomic variation in haloarchaea … and possibly cold-temperature enzymes for biotechnological use. Summary Conditions such as extreme cold, high levels of …
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Notes on the Microbial Diversity of Puerto Nuevo’s Coastline
… snails, UC Merced graduate student Sabah Ul-Hasan and alumnus of the JGI-UC Merced Genomics Internship Program, first sampled the area in … Nuevo is, historically, a fishing town and we know little about its coastal microbial ecology. We also know little …
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Novel and Emerging Capabilities that Can Provide a Holistic Understanding of the Plant Root Microbiome
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Natural soil microbiome variation affects spring foliar phenology with consequences for plant productivity and climate‐driven range shifts
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Nitrogen fixation in Pampinifervens, a new species-rich genus of Aquificaceae that inhabits a wide pH range in terrestrial hot springs
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Ray Turner Completes Last Tour of Lab Duty at JGI
… JGI’s Operations Deputy has come to a close as this previously retired Naval Commander retires from Berkeley Lab. For … co-localization of JGI and KBase at the Integrative Genomics Building (IGB). Said Michael Brandt of Ray, “You … is still good. “I noticed right away,” said Ellen Ford about Ray’s personal impact on her, “that you started …
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Exploring the roles of microbes in facilitating plant adaptation to climate change
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