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Restoring wetlands on intensive agricultural lands modifies nitrogen cycling microbial communities and reduces N2O production potential
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Defining the eco-enzymological role of the fungal strain Coniochaeta sp. 2T2.1 in a tripartite lignocellulolytic microbial consortium
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Biogeography and organic matter removal shape long-term effects of timber harvesting on forest soil microbial communities
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Homologous Recombination and Transposon Propagation Shape the Population Structure of an Organism from the Deep Subsurface with Minimal Metabolism
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Uncovering the dominant role of root metabolism in shaping rhizosphere metabolome under drought in tropical rainforest plants
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Improved-high-quality draft genome sequence of Rhodococcus sp. JG-3, a eurypsychrophilic Actinobacteria from Antarctic Dry Valley permafrost
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User Support Analysis Group
… computational analysis for new technology development and JGI user science projects. We perform analysis for diverse … of highly customized analysis workflows for new product types, to the development of automated analysis pipelines for standard sequencing products performed at scale. Our group also performs ‘proof-of …
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Marchantia Pangenome Highlights Adaptive Nature of Plant Lineages
… Understanding the shared genetic toolkit of ancestral and present-day plants … the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at … to their environments, two gene families—peroxidases and nucleotide-binding leucine-rich repeats (NLRs) —stood out for …
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A comparative genomics screen identifies a Sinorhizobium meliloti 1021 sodM-like gene strongly expressed within host plant nodules
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Defining a Pan-Genome for Antarctic Archaea
… regional and global biogeography of haloarchaea and the structure and extent of the Antarctic microbial pan-genome. … applications. The work has been enabled through the JGI Community Science Program (CSP) . Cavicchioli and his … pan-genome of haloarchaea contains the parts of the genome shared across all haloarchaea, along with the pool of genes …
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Cultivating Symbiotic Antarctic Microbes
… and the biosphere), including the global carbon cycle. The JGI is sequencing large numbers of microbes and microbial … genome size. The obligate symbiont’s genome is often reduced compared to that of a free-living organism. First … superphylum of extremophilic archaea first outlined by JGI scientists and their collaborators in 2013. While most …
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Frederik Schulz
… to find novel functions that may impact microbiome structure and biogeochemical cycles. He provides his expertise to the JGI user community and supports various user projects in the … and complex life. Science . 376: 1453-1458 Nayfach et al. (2021) A genomic catalog of Earth’s microbiomes. Nature …
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