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A Revamped Amplification Method that Enables Nearly Complete Single-Cell Genomes
… With a new methodology, scientists are now getting more complete … Amplification to generate enough DNA to put on a sequencer. As previously mentioned, it’s a method that’s … the DNA sequences came from one cell, including components like plasmids, the picture is far from complete.  In 2021 , …
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Toward More Reproducible, Reusable Stable Isotope Probing Experiments
… As SIP experiments shed more light on microbial communities … a  Minimum Information for any Stable Isotope Probing Sequence (MISIP) . They differentiate between required … was really productive,” he said.  Data reporting standards, like Wilhelm’s MISIP framework, were interesting to lots of …
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Supercharging SIP in the Fungal Hyphosphere
… High-throughput stable isotope probing helps ID novel interactions between … Because microorganisms live in complex communities, like within soils or the gut, they are difficult to study … individually. Many microorganisms hold clues to processes like biodegradation, with potential applications in industry …
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JGI@25: From Life at the Extremes to Editing Genomes
… In honor of the JGI's 25th anniversary in 2022, we have revisited a number of notable … CA. Banfield’s observations of the CRISPRs in her microbial sequences piqued Doudna’s interest. As Doudna noted in her … On Jennifer Doudna's Nobel Prize … Berkeley Lab coverage …
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JGI-Enabled Research Demonstrates the Existence of New Methane-Makers
… New studies show methanogenesis is not exclusively for Euryarchaeota. Atmospheric … “These new groups were discovered not by cultivation, like the original methanogens were, but they were discovered … more closely study the microorganisms that seemed mostly likely to be engaging in methane production to confirm that …
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Building Wet and Dry Lab Skills
… Summer 2025 marked the second year of Alabama A&M University students … to analyze plant microbiome data via programming languages like Python. The more specific goal of the project is to … Zhai : And they have learned a lot I think. And they can do like independent work right now. Yeah. Yeah. They're …
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Eelgrass Proves to Be Much Younger Than We Thought
… Recent study shows eelgrass has been around about 2.5 million years less than … about 3 million years ago. The study shows that figure is likely closer to a mere 250,000 years — with many key … locations.  One group investigated changes in protein sequences, while others analyzed single point mutations …
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Improving the coverage of the cyanobacterial phylum using diversity-driven genome sequencing
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Annotated Genome Sequence of the High-Biomass-Producing Yellow-Green Alga Tribonema minus
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Widespread Polycistronic Transcripts in Fungi Revealed by Single-Molecule mRNA Sequencing
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A mosaic monoploid reference sequence for the highly complex genome of sugarcane
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Draft Genome Sequence of Neurospora crassa Strain FGSC 73
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