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A More Intuitive Phytozome Interface
… Potri.006G034600 on v13 ) Gene Family pages are treated differently, because the active gene family version in v13 is different from the one in v12.  v12 Family pages will be …
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Supercharging SIP in the Fungal Hyphosphere
… of land plants, which means they offer a lot of insights into how plant materials can be broken down for things like … a stable isotope to it. The isotopes are incorporated into the DNA of specific microbes who consume the labeled … water, the microbial DNA is manually separated into a few different groups based on its density — DNA containing …
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JGI@25: The Little Alga That Could
… Retaining ancestral features of both plant and animal cells, it shares nearly 7,000 genes with other organisms (a …
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JGI Contributes Eight to 2023 Highly Cited Researchers list
… and evaluates multiple predictions to reliably match viruses with their archaea and bacteria hosts.  Jeremy …
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The More the Merrier: Making the Case for Plant Pan-genomes
… correspond to the same recurrent speciation outcome or to different species,” added Catalan. Overall, Vogel noted, the … been expected. “Although every case is probably going to be different, at least for B. hybridum it’s happening a lot …
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Data Discovery Tool Helps Identify Microbial Roles within Metagenomes
… Protein annotations provide insights into environmental tendencies The Science The  Metagenome … abundances of gene annotations that provide insights into the nutrients that are being used and cycled in different environments. It also shows how environmental …
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Tanja Woyke
… is now her primary interest and passion. Dr. Woyke stepped into the Microbial Genomics Program Lead position in 2009 … Nature Biotechnology 35, 676-683. Schulz et al. 2017. Giant viruses with an expanded complement of translation system … the wild. Science 344, 909-913. Rinke et al. 2013. Insights into the phylogeny and coding potential of microbial dark …
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What Happens Underground Influences Global Nutrient Cycles
… library leads to photosynthetic defects, offering insights into how algal ponds can regulate photosynthesis under … reaction networks, and also assessing the role of viruses in the soil microbiome. Another accepted proposal in …
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JGI@25: From Life at the Extremes to Editing Genomes
… of intrigue down my spine; if CRISPR was present in so many different species, there was a good chance that nature was …
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Building Sphagnum Genomic Resources
… reference genomes for peat-forming species that occupy different microhabitats – Sphagnum fallax and S. … work reflects a collaboration between two programs within different Divisions of the Office of Biological and …
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Tracing the Evolution of Shiitake Mushrooms
… could provide strategies for converting plant waste into sugars for  biofuel production. Additionally, these … access carbon previously locked away in wood, converting it into their own carbon-rich structures, as well as … that brought together 39 researchers from eight different countries. Genome and transcriptome sequencing …
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Accelerating Metagenomics Discoveries with Deep Learning
… data gathered from whole samples rather than single cells or isolated strains, is easy to generate, but … learning, data is passed through algorithms organized into multiple interconnected layers. The architecture of … is magical; transform any length of amino acid sequence into a smaller, constant-length vector using deep learning. …
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